Restricting retrotransposons: a review

JL Goodier - Mobile DNA, 2016 - Springer
Retrotransposons have generated about 40% of the human genome. This review examines
the strategies the cell has evolved to coexist with these genomic “parasites”, focussing on …

APOBEC: A molecular driver in cervical cancer pathogenesis

S Revathidevi, AK Murugan, H Nakaoka, I Inoue… - Cancer letters, 2021 - Elsevier
Cervical cancer is one of the foremost common cancers in women. Human papillomavirus
(HPV) infection remains a major risk factor of cervical cancer. In addition, numerous other …

The landscape of somatic mutation in normal colorectal epithelial cells

H Lee-Six, S Olafsson, P Ellis, RJ Osborne… - Nature, 2019 - nature.com
The colorectal adenoma–carcinoma sequence has provided a paradigmatic framework for
understanding the successive somatic genetic changes and consequent clonal expansions …

Characterizing mutational signatures in human cancer cell lines reveals episodic APOBEC mutagenesis

M Petljak, LB Alexandrov, JS Brammeld, S Price… - Cell, 2019 - cell.com
Multiple signatures of somatic mutations have been identified in cancer genomes. Exome
sequences of 1,001 human cancer cell lines and 577 xenografts revealed most common …

[HTML][HTML] Methods and applications of CRISPR-mediated base editing in eukaryotic genomes

GT Hess, J Tycko, D Yao, MC Bassik - Molecular cell, 2017 - cell.com
The past several years have seen an explosion in development of applications for the
CRISPR-Cas9 system, from efficient genome editing, to high-throughput screening, to …

RNA editing in the forefront of epitranscriptomics and human health

T Christofi, A Zaravinos - Journal of translational medicine, 2019 - Springer
Post-transcriptional modifications have been recently expanded with the addition of RNA
editing, which is predominantly mediated by adenosine and cytidine deaminases acting on …

Human papillomavirus E6 triggers upregulation of the antiviral and cancer genomic DNA deaminase APOBEC3B

VC Vieira, B Leonard, EA White, GJ Starrett, NA Temiz… - MBio, 2014 - Am Soc Microbiol
Several recent studies have converged upon the innate immune DNA cytosine deaminase
APOBEC3B (A3B) as a significant source of genomic uracil lesions and mutagenesis in …

The genomic landscape of Epstein-Barr virus-associated pulmonary lymphoepithelioma-like carcinoma

S Hong, D Liu, S Luo, W Fang, J Zhan, S Fu… - Nature …, 2019 - nature.com
Pulmonary lymphoepithelioma-like carcinoma (LELC) is a rare and distinct subtype of
primary lung cancer characterized by Epstein-Barr virus (EBV) infection. Herein, we reported …

Human papillomavirus and the landscape of secondary genetic alterations in oral cancers

ML Gillison, K Akagi, W Xiao, B Jiang… - Genome …, 2019 - genome.cshlp.org
Human papillomavirus (HPV) is a necessary but insufficient cause of a subset of oral
squamous cell carcinomas (OSCCs) that is increasing markedly in frequency. To identify …

When hepatitis B virus meets interferons

G Tan, H Song, F Xu, G Cheng - Frontiers in microbiology, 2018 - frontiersin.org
Chronic hepatitis B virus (HBV) infection imposes a severe burden on global public health.
Currently, there are no curative therapies for millions of chronic HBV-infected patients …