Machine learning approaches to predict drug efficacy and toxicity in oncology

BA Badwan, G Liaropoulos, E Kyrodimos, D Skaltsas… - Cell reports …, 2023 - cell.com
In recent years, there has been a surge of interest in using machine learning algorithms
(MLAs) in oncology, particularly for biomedical applications such as drug discovery, drug …

The impact of supervised learning methods in ultralarge high-throughput docking

CN Cavasotto, JI Di Filippo - Journal of Chemical Information and …, 2023 - ACS Publications
Structure-based virtual screening methods are, nowadays, one of the key pillars of
computational drug discovery. In recent years, a series of studies have reported docking …

Room-temperature crystallography reveals altered binding of small-molecule fragments to PTP1B

TS Mehlman, JT Biel, SM Azeem, ER Nelson… - Elife, 2023 - elifesciences.org
Much of our current understanding of how small-molecule ligands interact with proteins
stems from X-ray crystal structures determined at cryogenic (cryo) temperature. For proteins …

Machine learning with enormous “synthetic” data sets: Predicting glass transition temperature of polyimides using graph convolutional neural networks

IV Volgin, PA Batyr, AV Matseevich, AY Dobrovskiy… - ACS …, 2022 - ACS Publications
In the present work, we address the problem of utilizing machine learning (ML) methods to
predict the thermal properties of polymers by establishing “structure–property” relationships …

Discovery of a novel SHIP1 agonist that promotes degradation of lipid-laden phagocytic cargo by microglia

C Pedicone, S Fernandes, A Matera, ST Meyer, S Loh… - IScience, 2022 - cell.com
Here, we describe the use of artificial intelligence to identify novel agonists of the SH2-
containing 5′ inositol phosphatase 1 (SHIP1). One of the compounds, K306, represents the …

Empowering precision medicine: regenerative AI in breast cancer

S Bhattacharya, SM Saleem, A Singh… - Frontiers in …, 2024 - pmc.ncbi.nlm.nih.gov
Regenerative AI is transforming breast cancer diagnosis and treatment through enhanced
imaging analysis, personalized medicine, drug discovery, and remote patient monitoring. AI …

Transformation of a Metal Chelate into a “Catch and Anchor” Inhibitor of Botulinum A Protease

L Lin, EN Patel, AL Nielsen, LD Turner… - International Journal of …, 2023 - mdpi.com
Targeting the botulinum neurotoxin light chain (LC) metalloprotease using small-molecule
metal chelate inhibitors is a promising approach to counter the effects of the lethal toxin …

VDAC1-interacting molecules promote cell death in cancer organoids through mitochondrial-dependent metabolic interference

SC Nibali, S De Siervi, E Luchinat, A Magrì, A Messina… - Iscience, 2024 - cell.com
The voltage-dependent anion-selective channel isoform 1 (VDAC1) is a pivotal component
in cellular metabolism and apoptosis with a prominent role in many cancer types, offering a …

Discovery of novel ULK1 inhibitors through machine learning-guided virtual screening and biological evaluation

MM Kong, T Wei, B Liu, ZX Xi, JT Ding… - Future Medicinal …, 2024 - Taylor & Francis
Aim: Build a virtual screening model for ULK1 inhibitors based on artificial intelligence.
Materials & methods: Build machine learning and deep learning classification models and …