Gene Interactions in human disease studies—evidence is mounting

P Singhal, SS Verma, MD Ritchie - Annual Review of Biomedical …, 2023 - annualreviews.org
Despite monumental advances in molecular technology to generate genome sequence data
at scale, there is still a considerable proportion of heritability in most complex diseases that …

Novel Alzheimer's disease genes and epistasis identified using machine learning GWAS platform

M Lundberg, LMF Sng, P Szul, R Dunne, A Bayat… - Scientific Reports, 2023 - nature.com
Alzheimer's disease (AD) is a complex genetic disease, and variants identified through
genome-wide association studies (GWAS) explain only part of its heritability. Epistasis has …

Deep integrative models for large-scale human genomics

AI Sigurdsson, I Louloudis, K Banasik… - Nucleic Acids …, 2023 - academic.oup.com
Polygenic risk scores (PRSs) are expected to play a critical role in precision medicine.
Currently, PRS predictors are generally based on linear models using summary statistics …

Genotype pattern mining for pairs of interacting variants underlying digenic traits

A Okazaki, S Horpaopan, Q Zhang, M Randesi, J Ott - Genes, 2021 - mdpi.com
Some genetic diseases (“digenic traits”) are due to the interaction between two DNA
variants, which presumably reflects biochemical interactions. For example, certain forms of …

Analysis of 3.6 million individuals yields minimal evidence of pairwise genetic interactions for height

MR Jabalameli, MV Holmes, 23andMe Research Team… - bioRxiv, 2024 - biorxiv.org
Adult height is a highly heritable polygenic trait with heritability attributable to thousands of
independent variants. Large-scale studies have been able to detect genetic variants with …

Searching for epistasis in complex traits: Genome-wide and biological knowledge-driven approaches in coronary artery disease

SC Moser - 2023 - mediatum.ub.tum.de
The role of epistasis in human complex traits is poorly understood due to multiple
challenges linked to its combinatorial nature. In this thesis, we developed methods to tackle …