Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2

K Gao, R Wang, J Chen, L Cheng, J Frishcosy… - Chemical …, 2022 - ACS Publications
Despite tremendous efforts in the past two years, our understanding of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), virus–host interactions, immune …

WGX50 mitigates doxorubicin-induced cardiotoxicity through inhibition of mitochondrial ROS and ferroptosis

P Tai, X Chen, G Jia, G Chen, L Gong, Y Cheng… - Journal of translational …, 2023 - Springer
Background Doxorubicin (DOX)-induced cardiotoxicity (DIC) is a major impediment to its
clinical application. It is indispensable to explore alternative treatment molecules or drugs for …

Molecular insights and optimization strategies for the competitive binding of engineered ACE2 proteins: A multiple replica molecular dynamics study

J Sun, X Liu, S Zhang, M Li, Q Zhang… - Physical Chemistry …, 2023 - pubs.rsc.org
The COVID-19 pandemic caused by severe acute respiratory syndrome coronavirus-2
(SARS-CoV-2) continues to spread globally, and rapid viral evolution and the emergence of …

Computational methods in the analysis of SARS-CoV-2 in mammals: A systematic review of the literature

PV Silva, CN Nobre - Computers in Biology and Medicine, 2024 - Elsevier
SARS-CoV-2 is an enveloped RNA virus that causes severe respiratory illness in humans
and animals. It infects cells by binding the Spike protein to the host's angiotensin-converting …

Interference of Chaga mushroom terpenoids with the attachment of SARS-CoV-2; in silico perspective

WM Elshemey, AA Elfiky, IM Ibrahim… - Computers in Biology and …, 2022 - Elsevier
Finding a potent inhibitor to the pandemic SARS-CoV-2 is indispensable nowadays.
Currently, in-silico methods work as expeditious investigators to screen drugs for possible …

An Experimental and Computational Analysis of Plant Compounds from Whole Urtica dioica L. Plant's Essential Oil for Antioxidant and Antibacterial Activities

MZ Khan, AK Azad, S Jan, M Safdar, S Bibi… - Metabolites, 2023 - mdpi.com
As the Urtica dioica L. whole plant's essential oil has presented significant multiple activities,
it was therefore evaluated using the GC–MS technique. This essential oil was investigated …

An integrated understanding of the evolutionary and structural features of the SARS-CoV-2 spike receptor binding domain (RBD)

D Sanyal, S Banerjee, A Bej, VR Chowdhury… - International Journal of …, 2022 - Elsevier
Conventional drug development strategies typically use pocket in protein structures as drug-
target sites. They overlook the plausible effects of protein evolvability and resistant mutations …

Analysis of E2F1 single-nucleotide polymorphisms reveals deleterious non-synonymous substitutions that disrupt E2F1-RB protein interaction in cancer

M Suleman, A Khattak, F Akbar, M Rizwan… - International Journal of …, 2024 - Elsevier
Cancer is a medical condition that is caused by the abnormal growth and division of cells,
leading to the formation of tumors. The E2F1 and RB pathways are critical in regulating cell …

Integrated all-atom and coarse-grained simulations uncover structural, dynamics and energetic shifts in SARS-CoV-2 JN. 1 and BA. 2.86 variants

A Sharma, S Maurya, T Tripathi, AK Padhi - Acta Tropica, 2024 - Elsevier
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), responsible for the COVID-
19 pandemic, is an enveloped, positive-stranded RNA virus that enters human cells by using …

Beta, delta, and omicron, deadliest among SARS-CoV-2 variants: a computational repurposing approach

MM Alam, SB Hannan, TA Saikat… - Evolutionary …, 2023 - journals.sagepub.com
SARS-CoV-2 has been highly susceptible to mutations since its emergence in Wuhan,
China, and its subsequent propagation due to containing an RNA as its genome. The …