The many alternative faces of macrophage activation
DA Hume - Frontiers in immunology, 2015 - frontiersin.org
Monocytes and macrophages provide the first line of defense against pathogens. They also
initiate acquired immunity by processing and presenting antigens and provide the …
initiate acquired immunity by processing and presenting antigens and provide the …
From RNA-seq reads to differential expression results
From RNA-seq reads to differential expression results | Genome Biology Skip to main content
SpringerLink Account Menu Find a journal Publish with us Track your research Search Cart …
SpringerLink Account Menu Find a journal Publish with us Track your research Search Cart …
The mouse microbiome is required for sex-specific diurnal rhythms of gene expression and metabolism
The circadian clock and associated feeding rhythms have a profound impact on metabolism
and the gut microbiome. To what extent microbiota reciprocally affect daily rhythms of …
and the gut microbiome. To what extent microbiota reciprocally affect daily rhythms of …
A scaling normalization method for differential expression analysis of RNA-seq data
MD Robinson, A Oshlack - Genome biology, 2010 - Springer
The fine detail provided by sequencing-based transcriptome surveys suggests that RNA-seq
is likely to become the platform of choice for interrogating steady state RNA. In order to …
is likely to become the platform of choice for interrogating steady state RNA. In order to …
[HTML][HTML] Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
Zebrafish, a popular organism for studying embryonic development and for modeling human
diseases, has so far lacked a systematic functional annotation program akin to those in other …
diseases, has so far lacked a systematic functional annotation program akin to those in other …
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
Extensive changes in DNA methylation are common in cancer and may contribute to
oncogenesis through transcriptional silencing of tumor-suppressor genes. Genome-scale …
oncogenesis through transcriptional silencing of tumor-suppressor genes. Genome-scale …
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
Background Next generation sequencing is transforming our understanding of
transcriptomes. It can determine the expression level of transcripts with a dynamic range of …
transcriptomes. It can determine the expression level of transcripts with a dynamic range of …
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
Accurate reconstruction of the regulatory networks that control gene expression is one of the
key current challenges in molecular biology. Although gene expression and chromatin state …
key current challenges in molecular biology. Although gene expression and chromatin state …
Corruption of the Pearson correlation coefficient by measurement error and its estimation, bias, and correction under different error models
E Saccenti, MHWB Hendriks, AK Smilde - Scientific reports, 2020 - nature.com
Correlation coefficients are abundantly used in the life sciences. Their use can be limited to
simple exploratory analysis or to construct association networks for visualization but they are …
simple exploratory analysis or to construct association networks for visualization but they are …
Statistical design and analysis of RNA sequencing data
Next-generation sequencing technologies are quickly becoming the preferred approach for
characterizing and quantifying entire genomes. Even though data produced from these …
characterizing and quantifying entire genomes. Even though data produced from these …