Bacterial small RNA regulators: versatile roles and rapidly evolving variations

S Gottesman, G Storz - Cold Spring Harbor perspectives …, 2011 - cshperspectives.cshlp.org
Small RNA regulators (sRNAs) have been identified in a wide range of bacteria and found to
play critical regulatory roles in many processes. The major families of sRNAs include true …

Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

JT Wade, DC Grainger - Nature Reviews Microbiology, 2014 - nature.com
The conventional view of transcription posits that mRNAs are generated from the coding
DNA strand and are delineated by gene boundaries; however, recent reports have mapped …

Bacterial antisense RNAs: how many are there, and what are they doing?

MK Thomason, G Storz - Annual review of genetics, 2010 - annualreviews.org
Antisense RNAs encoded on the DNA strand opposite another gene have the potential to
form extensive base-pairing interactions with the corresponding sense RNA. Unlike other …

Advances in promoter engineering: novel applications and predefined transcriptional control

AP Cazier, J Blazeck - Biotechnology Journal, 2021 - Wiley Online Library
Synthetic biology continues to progress by relying on more robust tools for transcriptional
control, of which promoters are the most fundamental component. Numerous studies have …

CRISPR interference-guided balancing of a biosynthetic mevalonate pathway increases terpenoid production

SK Kim, GH Han, W Seong, H Kim, SW Kim, DH Lee… - Metabolic …, 2016 - Elsevier
Methods for simple and efficient regulation of metabolic pathway genes are essential for
maximizing product titers and conversion yields, and for minimizing the metabolic burden …

Anatomy of Escherichia coli σ 70 promoters

RK Shultzaberger, Z Chen, KA Lewis… - Nucleic acids …, 2007 - academic.oup.com
Abstract Information theory was used to build a promoter model that accounts for the− 10,
the− 35 and the uncertainty of the gap between them on a common scale. Helical face …

Widespread antisense transcription in Escherichia coli

JE Dornenburg, AM DeVita, MJ Palumbo, JT Wade - MBio, 2010 - Am Soc Microbiol
The vast majority of annotated transcripts in bacteria are mRNAs. Here we identify~ 1,000
antisense transcripts in the model bacterium Escherichia coli. We propose that these …

Antisense transcription as a tool to tune gene expression

JAN Brophy, CA Voigt - Molecular systems biology, 2016 - embopress.org
A surprise that has emerged from transcriptomics is the prevalence of genomic antisense
transcription, which occurs counter to gene orientation. While frequent, the roles of antisense …

Transcription initiation by mix and match elements: flexibility for polymerase binding to bacterial promoters

IG Hook-Barnard, DM Hinton - Gene regulation and systems …, 2007 - journals.sagepub.com
Bacterial RNA polymerase is composed of a core of subunits (β β′, α1, α2, ω), which have
RNA synthesizing activity, and a specificity factor (σ), which identifies the start of transcription …

Transcription control engineering and applications in synthetic biology

MD Engstrom, BF Pfleger - Synthetic and systems biotechnology, 2017 - Elsevier
In synthetic biology, researchers assemble biological components in new ways to produce
systems with practical applications. One of these practical applications is control of the flow …