[HTML][HTML] Library preparation for next generation sequencing: A review of automation strategies

JF Hess, TA Kohl, M Kotrová, K Rönsch… - Biotechnology …, 2020 - Elsevier
Next generation sequencing is in the process of evolving from a technology used for
research purposes to one which is applied in clinical diagnostics. Recently introduced high …

Adaptive immune receptor repertoire analysis

V Mhanna, H Bashour, K Lê Quý, P Barennes… - Nature Reviews …, 2024 - nature.com
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …

Next-generation sequencing of T and B cell receptor repertoires from COVID-19 patients showed signatures associated with severity of disease

C Schultheiß, L Paschold, D Simnica, M Mohme… - Immunity, 2020 - cell.com
We profiled adaptive immunity in COVID-19 patients with active infection or after recovery
and created a repository of currently> 14 million B and T cell receptor (BCR and TCR) …

Long-term safety and efficacy of lentiviral hematopoietic stem/progenitor cell gene therapy for Wiskott–Aldrich syndrome

A Magnani, M Semeraro, F Adam, C Booth, L Dupré… - Nature Medicine, 2022 - nature.com
Abstract Patients with Wiskott–Aldrich syndrome (WAS) lacking a human leukocyte antigen-
matched donor may benefit from gene therapy through the provision of gene-corrected …

Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases

P Barennes, V Quiniou, M Shugay, ES Egorov… - Nature …, 2021 - nature.com
Monitoring the T cell receptor (TCR) repertoire in health and disease can provide key
insights into adaptive immune responses, but the accuracy of current TCR sequencing …

Next-generation sequencing of immunoglobulin gene rearrangements for clonality assessment: a technical feasibility study by EuroClonality-NGS

B Scheijen, RWJ Meijers, J Rijntjes, MY van der Klift… - Leukemia, 2019 - nature.com
One of the hallmarks of B lymphoid malignancies is a B cell clone characterized by a unique
footprint of clonal immunoglobulin (IG) gene rearrangements that serves as a diagnostic …

Response-adapted postinduction strategy in patients with advanced-stage follicular lymphoma: the FOLL12 study

S Luminari, M Manni, S Galimberti, A Versari… - Journal of Clinical …, 2022 - ascopubs.org
PURPOSE We compared 2 years of rituximab maintenance (RM) with a response-adapted
postinduction approach in patients with follicular lymphoma who responded to induction …

Tumor and microenvironment response but no cytotoxic T-cell activation in classic Hodgkin lymphoma treated with anti-PD1

S Reinke, PJ Bröckelmann, I Iaccarino… - Blood, The Journal …, 2020 - ashpublications.org
Classic Hodgkin lymphoma (cHL) is the cancer type most susceptible to antibodies targeting
programmed cell death protein 1 (PD1) and is characterized by scarce Hodgkin and Reed …

Circulating tumor DNA in lymphoma: principles and future directions

M Roschewski, D Rossi, DM Kurtz, AA Alizadeh… - Blood Cancer …, 2022 - AACR
Lymphomas are heterogeneous tumors with striking genetic diversity and variable outcomes
even within pathologic diagnoses. Treatment response assessment relies on radiologic and …

[HTML][HTML] Standardized high-throughput biomonitoring using DNA metabarcoding: Strategies for the adoption of automated liquid handlers

D Buchner, TH Macher, AJ Beermann… - Environmental Science …, 2021 - Elsevier
Reliable and comprehensive monitoring data are required to trace and counteract
biodiversity loss. High-throughput metabarcoding using DNA extracted from community …