AF2Complex predicts direct physical interactions in multimeric proteins with deep learning

M Gao, D Nakajima An, JM Parks, J Skolnick - Nature communications, 2022 - nature.com
Accurate descriptions of protein-protein interactions are essential for understanding
biological systems. Remarkably accurate atomic structures have been recently computed for …

State-of-the-art web services for de novo protein structure prediction

LA Abriata, M Dal Peraro - Briefings in Bioinformatics, 2021 - academic.oup.com
Residue coevolution estimations coupled to machine learning methods are revolutionizing
the ability of protein structure prediction approaches to model proteins that lack clear …

A brief survey of the “cytochromome”

CM Paquete, G Rusconi, AV Silva, R Soares… - Advances in Microbial …, 2019 - Elsevier
Multihaem cytochromes c are widespread in nature where they perform numerous roles in
diverse anaerobic metabolic pathways. This is achieved in two ways: multihaem …

Cryo-EM of CcsBA reveals the basis for cytochrome c biogenesis and heme transport

DL Mendez, EP Lowder, DE Tillman… - Nature chemical …, 2022 - nature.com
Although the individual structures and respiratory functions of cytochromes are well studied,
the structural basis for their assembly, including transport of heme for attachment, are …

Structures of the CcmABCD heme release complex at multiple states

J Li, W Zheng, M Gu, L Han, Y Luo, K Yu, M Sun… - Nature …, 2022 - nature.com
Cytochromes c use heme as a cofactor to carry electrons in respiration and photosynthesis.
The cytochrome c maturation system I, consisting of eight membrane proteins …

Assembly of Protein Complexes In and On the Membrane with Predicted Spatial Arrangement Constraints

C Christoffer, K Harini, G Archit, D Kihara - Journal of Molecular Biology, 2024 - Elsevier
Membrane proteins play crucial roles in various cellular processes, and their interactions
with other proteins in and on the membrane are essential for their proper functioning. While …

In vitro reconstitution reveals major differences between human and bacterial cytochrome c synthases

MC Sutherland, DL Mendez, SE Babbitt, DE Tillman… - Elife, 2021 - elifesciences.org
Cytochromes c are ubiquitous heme proteins in mitochondria and bacteria, all possessing a
CXXCH (CysXxxXxxCysHis) motif with covalently attached heme. We describe the first in …

Structure-function analysis of the heme-binding WWD domain in the bacterial holocytochrome c synthase, CcmFH

AL Grunow, SC Carroll, AN Kreiman, MC Sutherland - Mbio, 2023 - Am Soc Microbiol
Heme trafficking is a fundamental biological process, yet its direct study has been hampered
due to heme's tight intracellular regulation, heme cytotoxicity, and the transient nature of …

Helicobacter pylori and Campylobacter jejuni bacterial holocytochrome c synthase structure-function analysis reveals conservation of heme binding

T Yeasmin, SC Carroll, DJ Hawtof… - Communications …, 2024 - nature.com
Heme trafficking is essential for cellular function, yet mechanisms of transport and/or heme
interaction are not well defined. The System I and System II bacterial cytochrome c …

[HTML][HTML] Rosa sterilis Juice Alleviated Breast Cancer by Triggering the Mitochondrial Apoptosis Pathway and Suppressing the Jak2/Stat3 Pathway

W Wang, S Huang, S Li, X Li, Y Ling, X Wang, S Zhang… - Nutrients, 2024 - mdpi.com
Rosa sterilis (RS) is a characteristic fruit in southwestern China that has numerous health
benefits; however, its pharmacological effect needs further clarification, especially with …