Viruses of archaea: structural, functional, environmental and evolutionary genomics

M Krupovic, V Cvirkaite-Krupovic, J Iranzo… - Virus research, 2018 - Elsevier
Viruses of archaea represent one of the most enigmatic parts of the virosphere. Most of the
characterized archaeal viruses infect extremophilic hosts and display remarkable diversity of …

Archaeal viruses: diversity, replication, and structure

N Dellas, JC Snyder, B Bolduc… - Annual Review of …, 2014 - annualreviews.org
The Archaea—and their viruses—remain the most enigmatic of life's three domains. Once
thought to inhabit only extreme environments, archaea are now known to inhabit diverse …

Sequence, structure and functional diversity of PD-(D/E) XK phosphodiesterase superfamily

K Steczkiewicz, A Muszewska, L Knizewski… - Nucleic acids …, 2012 - academic.oup.com
Proteins belonging to PD-(D/E) XK phosphodiesterases constitute a functionally diverse
superfamily with representatives involved in replication, restriction, DNA repair and tRNA …

Sulfolobus spindle-shaped virus 1 contains glycosylated capsid proteins, a cellular chromatin protein, and host-derived lipids

ERJ Quemin, MK Pietilä, HM Oksanen… - Journal of …, 2015 - Am Soc Microbiol
Geothermal and hypersaline environments are rich in virus-like particles, among which
spindle-shaped morphotypes dominate. Currently, viruses with spindle-or lemon-shaped …

Telomere-Targeted Retrotransposons in the Rice Blast Fungus Magnaporthe oryzae: Agents of Telomere Instability

JH Starnes, DW Thornbury, OS Novikova… - Genetics, 2012 - academic.oup.com
The fungus Magnaporthe oryzae is a serious pathogen of rice and other grasses. Telomeric
restriction fragments in Magnaporthe isolates that infect perennial ryegrass (prg) are …

The molecular mechanism of cellular attachment for an archaeal virus

R Hartman, BJ Eilers, D Bollschweiler… - Structure, 2019 - cell.com
Sulfolobus turreted icosahedral virus (STIV) is a model archaeal virus and member of the
PRD1-adenovirus lineage. Although STIV employs pyramidal lysis structures to exit the host …

Cyclic Tetra-Adenylate (cA4) Recognition by Csa3; Implications for an Integrated Class 1 CRISPR-Cas Immune Response in Saccharolobus solfataricus

AA Charbonneau, DM Eckert, CC Gauvin, NG Lintner… - Biomolecules, 2021 - mdpi.com
Csa3 family transcription factors are ancillary CRISPR-associated proteins composed of N-
terminal CARF domains and C-terminal winged helix-turn-helix domains. The activity of …

Csx3 is a cyclic oligonucleotide phosphodiesterase associated with type III CRISPR–Cas that degrades the second messenger cA4

S Brown, CC Gauvin, AA Charbonneau… - Journal of Biological …, 2020 - ASBMB
Cas10 is the signature gene for type III CRISPR–Cas surveillance complexes. Unlike type I
and type II systems, type III systems do not require a protospacer adjacent motif and target …

Molecular biology of fuselloviruses and their satellites

P Contursi, S Fusco, R Cannio, Q She - Extremophiles, 2014 - Springer
Fuselloviruses, also known as Sulfolobus Spindle-shaped viruses (SSVs), are “lemon”-or
“spindle”-shaped double-stranded DNA viruses. Among them, SSV1, SSV2 and the satellite …

Identification of new homologs of PD-(D/E) XK nucleases by support vector machines trained on data derived from profile–profile alignments

M Laganeckas, M Margelevičius… - Nucleic acids …, 2011 - academic.oup.com
Abstract PD-(D/E) XK nucleases, initially represented by only Type II restriction enzymes,
now comprise a large and extremely diverse superfamily of proteins. They participate in …