Copy number variation: new insights in genome diversity

JL Freeman, GH Perry, L Feuk, R Redon… - Genome …, 2006 - genome.cshlp.org
DNA copy number variation has long been associated with specific chromosomal
rearrangements and genomic disorders, but its ubiquity in mammalian genomes was not …

Primate segmental duplications: crucibles of evolution, diversity and disease

JA Bailey, EE Eichler - Nature Reviews Genetics, 2006 - nature.com
Compared with other mammals, the genomes of humans and other primates show an
enrichment of large, interspersed segmental duplications (SDs) with high levels of sequence …

Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution

KR Bredemeyer, LD Hillier, AJ Harris, GM Hughes… - Nature …, 2023 - nature.com
The role of structurally dynamic genomic regions in speciation is poorly understood due to
challenges inherent in diploid genome assembly. Here we reconstructed the evolutionary …

Genome sequence, comparative analysis and haplotype structure of the domestic dog

K Lindblad-Toh, CM Wade, TS Mikkelsen, EK Karlsson… - Nature, 2005 - nature.com
Here we report a high-quality draft genome sequence of the domestic dog (Canis familiaris),
together with a dense map of single nucleotide polymorphisms (SNPs) across breeds. The …

Comparative genomics of trypanosomatid parasitic protozoa

NM El-Sayed, PJ Myler, G Blandin, M Berriman… - Science, 2005 - science.org
A comparison of gene content and genome architecture of Trypanosoma brucei,
Trypanosoma cruzi, and Leishmania major, three related pathogens with different life cycles …

Segmental duplications and copy-number variation in the human genome

AJ Sharp, DP Locke, SD McGrath, Z Cheng… - The American Journal of …, 2005 - cell.com
The human genome contains numerous blocks of highly homologous duplicated sequence.
This higher-order architecture provides a substrate for recombination and recurrent …

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya… - Nature, 2007 - nature.com
We report a high-quality draft of the genome sequence of the grey, short-tailed opossum
(Monodelphis domestica). As the first metatherian ('marsupial') species to be sequenced, the …

Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps

WJ Murphy, DM Larkin, AE der Wind, G Bourque… - science, 2005 - science.org
The genome organizations of eight phylogenetically distinct species from five mammalian
orders were compared in order to address fundamental questions relating to mammalian …

A high‐density linkage map enables a second‐generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and …

T Kawakami, L Smeds, N Backström, A Husby… - Molecular …, 2014 - Wiley Online Library
Detailed linkage and recombination rate maps are necessary to use the full potential of
genome sequencing and population genomic analyses. We used a custom collared …

Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome

AR Quinlan, RA Clark, S Sokolova… - Genome …, 2010 - genome.cshlp.org
Structural variation (SV) is a rich source of genetic diversity in mammals, but due to the
challenges associated with mapping SV in complex genomes, basic questions regarding …