Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea

J Chun, FA Rainey - International journal of systematic …, 2014 - microbiologyresearch.org
The polyphasic approach used today in the taxonomy and systematics of the Bacteria and
Archaea includes the use of phenotypic, chemotaxonomic and genotypic data. The use of …

UBCG: up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction

SI Na, YO Kim, SH Yoon, S Ha, I Baek, J Chun - Journal of Microbiology, 2018 - Springer
Genome-based phylogeny plays a central role in the future taxonomy and phylogenetics of
Bacteria and Archaea by replacing 16S rRNA gene phylogeny. The concatenated core gene …

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

SH Yoon, SM Ha, S Kwon, J Lim… - … of systematic and …, 2017 - microbiologyresearch.org
The recent advent of DNA sequencing technologies facilitates the use of genome
sequencing data that provide means for more informative and precise classification and …

16S rRNA gene-based identification of bacteria and archaea using the EzTaxon server

M Kim, J Chun - Methods in microbiology, 2014 - Elsevier
Abstract 16S ribosomal RNA sequences have been used extensively in the classification
and identification of Bacteria and Archaea. The comparison of almost complete 16S rRNA …

Seawater desalination based drinking water: Microbial characterization during distribution with and without residual chlorine

N Farhat, L Kim, K Mineta, M Alarawi, T Gojobori… - Water research, 2022 - Elsevier
Monitoring the changes that occur to water during distribution is vital to ensure water safety.
In this study, the biological stability of reverse osmosis (RO) produced drinking water …

Diesel degradation by emulsifying bacteria isolated from soils polluted with weathered petroleum hydrocarbons

G Morales-Guzmán, R Ferrera-Cerrato… - Applied Soil …, 2017 - Elsevier
This study evaluated bacterial populations (total, lipolytic, P-solubilizers, N-fixing free, and
hydrocarbonoclastic bacteria) from uncontaminated soils or soils contaminated with …

Disruption of mstna and mstnb gene through CRISPR/Cas9 leads to elevated muscle mass in blunt snout bream (Megalobrama amblycephala)

Y Sun, GD Zheng, M Nissa, J Chen, SM Zou - Aquaculture, 2020 - Elsevier
Myostatin (mstn) belongs to the TGF-β family, which is mainly involved in the negative
regulation of myogenesis in vertebrates. Upon implementation of several gene-editing …

[HTML][HTML] Mycolicibacterium sp. strain PAM1, an alfalfa rhizosphere dweller, catabolizes PAHs and promotes partner-plant growth

SN Golubev, AY Muratova, LV Panchenko… - Microbiological …, 2021 - Elsevier
This research was focused on the isolation and characterization of a PAH-catabolizing
mycobacterial strain from the petroleum hydrocarbon-contaminated rhizosphere of alfalfa, as …

[HTML][HTML] The salt-tolerant phenazine-1-carboxamide-producing bacterium Pseudomonas aeruginosa NF011 isolated from wheat rhizosphere soil in dry farmland with …

X Sun, Y Xu, L Chen, X Jin, H Ni - Microbiological research, 2021 - Elsevier
Fusarium head blight (FHB) disease caused by Fusarium graminearum (Fg) seriously affects
the yield and quality of wheat. In this study, after bacterial community analysis of two wheat …

Actinomycin-Producing Endophytic Streptomyces parvulus Associated with Root of Aloe vera and Optimization of Conditions for Antibiotic Production

S Chandrakar, AK Gupta - Probiotics and antimicrobial proteins, 2019 - Springer
Endophytic actinomycetes are a rich source of novel antimicrobial compounds. The aim of
this study was to evaluate the production of antimicrobial compound by endophytic …