The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease

MM Babu - Biochemical Society Transactions, 2016 - portlandpress.com
In the 1960s, Christian Anfinsen postulated that the unique three-dimensional structure of a
protein is determined by its amino acid sequence. This work laid the foundation for the …

Dynamics-driven allostery in protein kinases

AP Kornev, SS Taylor - Trends in biochemical sciences, 2015 - cell.com
Protein kinases have very dynamic structures and their functionality strongly depends on
their dynamic state. Active kinases reveal a dynamic pattern with residues clustering into …

Impact of protein conformational diversity on AlphaFold predictions

T Saldaño, N Escobedo, J Marchetti, DJ Zea… - …, 2022 - academic.oup.com
Motivation After the outstanding breakthrough of AlphaFold in predicting protein 3D models,
new questions appeared and remain unanswered. The ensemble nature of proteins, for …

Dynamic protein interaction networks and new structural paradigms in signaling

V Csizmok, AV Follis, RW Kriwacki… - Chemical …, 2016 - ACS Publications
Understanding signaling and other complex biological processes requires elucidating the
critical roles of intrinsically disordered proteins (IDPs) and regions (IDRs), which represent∼ …

Intrinsically disordered proteins play diverse roles in cell signaling

SE Bondos, AK Dunker, VN Uversky - Cell Communication and Signaling, 2022 - Springer
Signaling pathways allow cells to detect and respond to a wide variety of chemical (eg Ca2+
or chemokine proteins) and physical stimuli (eg, sheer stress, light). Together, these …

[HTML][HTML] Functional advantages of dynamic protein disorder

RB Berlow, HJ Dyson, PE Wright - FEBS letters, 2015 - Elsevier
Intrinsically disordered proteins participate in many important cellular regulatory processes.
The absence of a well-defined structure in the free state of a disordered domain, and even …

Hypersensitive termination of the hypoxic response by a disordered protein switch

RB Berlow, HJ Dyson, PE Wright - Nature, 2017 - nature.com
The cellular response to hypoxia is critical for cell survival and is fine-tuned to allow cells to
recover from hypoxic stress and adapt to heterogeneous or fluctuating oxygen levels,. The …

Expanding the paradigm: intrinsically disordered proteins and allosteric regulation

RB Berlow, HJ Dyson, PE Wright - Journal of molecular biology, 2018 - Elsevier
Allosteric regulatory processes are implicated at all levels of biological function. Recent
advances in our understanding of the diverse and functionally significant class of intrinsically …

Solution NMR spectroscopy for the study of enzyme allostery

GP Lisi, JP Loria - Chemical reviews, 2016 - ACS Publications
Allostery is a ubiquitous biological regulatory process in which distant binding sites within a
protein or enzyme are functionally and thermodynamically coupled. Allosteric interactions …

Multivalency enables unidirectional switch-like competition between intrinsically disordered proteins

RB Berlow, HJ Dyson… - Proceedings of the …, 2022 - National Acad Sciences
Intrinsically disordered proteins must compete for binding to common regulatory targets to
carry out their biological functions. Previously, we showed that the activation domains of two …