Detecting liquid remnants of solid tumors: circulating tumor DNA minimal residual disease

EJ Moding, BY Nabet, AA Alizadeh, M Diehn - Cancer discovery, 2021 - AACR
Growing evidence demonstrates that circulating tumor DNA (ctDNA) minimal residual
disease (MRD) following treatment for solid tumors predicts relapse. These results suggest …

A clinician's handbook for using ctDNA throughout the patient journey

SO Hasenleithner, MR Speicher - Molecular cancer, 2022 - Springer
Background The promise of precision cancer medicine presently centers around the
genomic sequence of a patient's tumor being translated into timely, actionable information to …

Genomic profiling for clinical decision making in lymphoid neoplasms

L De Leval, AA Alizadeh, PL Bergsagel… - Blood, The Journal …, 2022 - ashpublications.org
With the introduction of large-scale molecular profiling methods and high-throughput
sequencing technologies, the genomic features of most lymphoid neoplasms have been …

Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials

Y Zheng, Y Liu, J Yang, L Dong, R Zhang, S Tian… - Nature …, 2024 - nature.com
Abstract Characterization and integration of the genome, epigenome, transcriptome,
proteome and metabolome of different datasets is difficult owing to a lack of ground truth …

Single duplex DNA sequencing with CODEC detects mutations with high sensitivity

JH Bae, R Liu, E Roberts, E Nguyen, S Tabrizi… - Nature Genetics, 2023 - nature.com
Detecting mutations from single DNA molecules is crucial in many fields but challenging.
Next-generation sequencing (NGS) affords tremendous throughput but cannot directly …

Individualized tumor-informed circulating tumor DNA analysis for postoperative monitoring of non-small cell lung cancer

K Chen, F Yang, H Shen, C Wang, X Li, O Chervova… - Cancer cell, 2023 - cell.com
We report a personalized tumor-informed technology, Patient-specific pROgnostic and
Potential tHErapeutic marker Tracking (PROPHET) using deep sequencing of 50 patient …

Integrating circulating-free DNA (cfDNA) analysis into clinical practice: opportunities and challenges

M Garcia-Pardo, M Makarem, JJN Li, D Kelly… - British Journal of …, 2022 - nature.com
In the current era of precision medicine, the identification of genomic alterations has
revolutionised the management of patients with solid tumours. Recent advances in the …

[HTML][HTML] Recommendations for a practical implementation of circulating tumor DNA mutation testing in metastatic non-small-cell lung cancer

E Heitzer, D Van Den Broek, MG Denis, P Hofman… - ESMO open, 2022 - Elsevier
Background Liquid biopsy (LB) is a rapidly evolving diagnostic tool for precision oncology
that has recently found its way into routine practice as an adjunct to tissue biopsy (TB). The …

Ultrasensitive detection of circulating tumour DNA via deep methylation sequencing aided by machine learning

N Liang, B Li, Z Jia, C Wang, P Wu, T Zheng… - Nature biomedical …, 2021 - nature.com
The low abundance of circulating tumour DNA (ctDNA) in plasma samples makes the
analysis of ctDNA biomarkers for the detection or monitoring of early-stage cancers …

Blood-based liquid biopsies for prostate cancer: clinical opportunities and challenges

B Trujillo, A Wu, D Wetterskog, G Attard - British journal of cancer, 2022 - nature.com
Liquid biopsy has been established as a powerful, minimally invasive, tool to detect clinically
actionable aberrations across numerous cancer types in real-time. With the development of …