H Luo, H Nijveen - Briefings in bioinformatics, 2014 - academic.oup.com
Amino acid repeats (AARs) are abundant in protein sequences. They have particular roles in protein function and evolution. Simple repeat patterns generated by DNA slippage tend to …
AV Kajava - Journal of structural biology, 2012 - Elsevier
The bioinformatics analysis of proteins containing tandem repeats requires special computer programs and databases, since the conventional approaches predominantly developed for …
Y Sun, H Wu, Z Xu, Z Yue, K Li - BMC bioinformatics, 2023 - Springer
Background Identification of hot spots in protein–DNA binding interfaces is extremely important for understanding the underlying mechanisms of protein–DNA interactions and …
Background Periodic proteins, characterized by the presence of multiple repeats of short motifs, form an interesting and seldom-studied group. Due to often extreme divergence in …
I Roterman, M Banach, L Konieczny - Pharmaceuticals, 2017 - mdpi.com
Amyloids characterized by unbounded growth of fibrillar structures cause many pathological processes. Such unbounded propagation is due to the presence of a propagating …
NY Song, H Yan - IEEE journal of biomedical and health …, 2012 - ieeexplore.ieee.org
Traditional signal processing methods cannot detect interspersed repeats and generally cannot handle nonstationary signals. In this paper, we propose a new method for periodicity …
JN Wells, JA Marsh - Computational Methods in Protein Evolution, 2019 - Springer
Reconstructing evolutionary relationships in repeat proteins is notoriously difficult due to the high degree of sequence divergence that typically occurs between duplicated repeats. This …
S Rajendran, A Jothi - International Journal of Data Mining …, 2020 - inderscienceonline.com
Solenoid proteins are proteins that contain repeating structural units. They are associated with many important biological functions and also key factors for the onset of many human …