[HTML][HTML] The tetratricopeptide-repeat motif is a versatile platform that enables diverse modes of molecular recognition

A Perez-Riba, LS Itzhaki - Current opinion in structural biology, 2019 - Elsevier
Highlights•The most common interaction is a short, negatively-charged peptide binding
across a groove formed by two to three TPRs.•Longer peptides bind in an extended …

Understanding and identifying amino acid repeats

H Luo, H Nijveen - Briefings in bioinformatics, 2014 - academic.oup.com
Amino acid repeats (AARs) are abundant in protein sequences. They have particular roles in
protein function and evolution. Simple repeat patterns generated by DNA slippage tend to …

Tandem repeats in proteins: from sequence to structure

AV Kajava - Journal of structural biology, 2012 - Elsevier
The bioinformatics analysis of proteins containing tandem repeats requires special computer
programs and databases, since the conventional approaches predominantly developed for …

Prediction of hot spots in protein–DNA binding interfaces based on discrete wavelet transform and wavelet packet transform

Y Sun, H Wu, Z Xu, Z Yue, K Li - BMC bioinformatics, 2023 - Springer
Background Identification of hot spots in protein–DNA binding interfaces is extremely
important for understanding the underlying mechanisms of protein–DNA interactions and …

ConSole: using modularity of Contact maps to locate Solenoid domains in protein structures

T Hrabe, A Godzik - BMC bioinformatics, 2014 - Springer
Background Periodic proteins, characterized by the presence of multiple repeats of short
motifs, form an interesting and seldom-studied group. Due to often extreme divergence in …

Propagation of fibrillar structural forms in proteins stopped by naturally occurring short polypeptide chain fragments

I Roterman, M Banach, L Konieczny - Pharmaceuticals, 2017 - mdpi.com
Amyloids characterized by unbounded growth of fibrillar structures cause many pathological
processes. Such unbounded propagation is due to the presence of a propagating …

Autoregressive and iterative hidden Markov models for periodicity detection and solenoid structure recognition in protein sequences

NY Song, H Yan - IEEE journal of biomedical and health …, 2012 - ieeexplore.ieee.org
Traditional signal processing methods cannot detect interspersed repeats and generally
cannot handle nonstationary signals. In this paper, we propose a new method for periodicity …

蛋白质螺线管域检测的序列和结构方法综述

丁德武, 夏启寿, 殷小玲 - 生物学杂志, 2017 - swxzz.com
蛋白质螺线管域检测的序列和结构方法综述 导航切换 生物学杂志 首页 关于期刊 期刊介绍 期刊
荣誉 收录情况 期刊历史 编委会 期刊在线 当期目次 网络首发 过刊浏览 知网查询 万方查询 维普 …

A Graph-Based Approach for Detecting Sequence Homology in Highly Diverged Repeat Protein Families

JN Wells, JA Marsh - Computational Methods in Protein Evolution, 2019 - Springer
Reconstructing evolutionary relationships in repeat proteins is notoriously difficult due to the
high degree of sequence divergence that typically occurs between duplicated repeats. This …

An amino acid property-based method for identifying solenoid proteins

S Rajendran, A Jothi - International Journal of Data Mining …, 2020 - inderscienceonline.com
Solenoid proteins are proteins that contain repeating structural units. They are associated
with many important biological functions and also key factors for the onset of many human …