Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

Quantitative proteomics using isobaric labeling: a practical guide

X Chen, Y Sun, T Zhang, L Shu… - Genomics …, 2021 - academic.oup.com
In the past decade, relative proteomic quantification using isobaric labeling technology has
developed into a key tool for comparing the expression of proteins in biological samples …

[HTML][HTML] Multisystem inflammatory syndrome in children is driven by zonulin-dependent loss of gut mucosal barrier

LM Yonker, T Gilboa, AF Ogata… - The Journal of …, 2021 - Am Soc Clin Investig
Multisystem inflammatory syndrome in children (MIS-C) occurs during or recently following
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and is …

The dTAG system for immediate and target-specific protein degradation

B Nabet, JM Roberts, DL Buckley, J Paulk… - Nature chemical …, 2018 - nature.com
Dissection of complex biological systems requires target-specific control of the function or
abundance of proteins. Genetic perturbations are limited by off-target effects …

Stromal microenvironment shapes the intratumoral architecture of pancreatic cancer

M Ligorio, S Sil, J Malagon-Lopez, LT Nieman… - Cell, 2019 - cell.com
Single-cell technologies have described heterogeneity across tissues, but the spatial
distribution and forces that drive single-cell phenotypes have not been well defined …

Benchmarking common quantification strategies for large-scale phosphoproteomics

A Hogrebe, L von Stechow, DB Bekker-Jensen… - Nature …, 2018 - nature.com
Comprehensive mass spectrometry (MS)-based proteomics is now feasible, but
reproducible quantification remains challenging, especially for post-translational …

Quantitative phosphoproteomic analysis of the molecular substrates of sleep need

Z Wang, J Ma, C Miyoshi, Y Li, M Sato, Y Ogawa, T Lou… - Nature, 2018 - nature.com
Sleep and wake have global effects on brain physiology, from molecular changes,,–and
neuronal activities to synaptic plasticity,,,–. Sleep–wake homeostasis is maintained by the …

Phosphoproteomics in the age of rapid and deep proteome profiling

NM Riley, JJ Coon - Analytical chemistry, 2016 - ACS Publications
Protein phosphorylation is a post-translational modification (PTM) that orchestrates a diverse
array of cellular processes. Because this modification serves as a rapid and reversible …

Tau contributes to sevoflurane-induced neurocognitive impairment in neonatal mice

Y Yu, Y Yang, H Tan, M Boukhali, A Khatri… - …, 2020 - pmc.ncbi.nlm.nih.gov
Background: Sevoflurane anesthesia induces Tau phosphorylation and cognitive
impairment in neonatal but not in adult mice. Here we tested the hypothesis that differences …

PARP1 inhibitors trigger innate immunity via PARP1 trapping-induced DNA damage response

C Kim, XD Wang, Y Yu - Elife, 2020 - elifesciences.org
It is being increasingly appreciated that the immunomodulatory functions of PARP1
inhibitors (PARPi) underlie their clinical activities in various BRCA-mutated tumors. PARPi …