GET: Global envelopes in R

M Myllymäki, T Mrkvička - arXiv preprint arXiv:1911.06583, 2019 - arxiv.org
This work describes the R package GET that implements global envelopes for a general set
of $ d $-dimensional vectors $ T $ in various applications. A $100 (1-\alpha) $% global …

The accumulated persistence function, a new useful functional summary statistic for topological data analysis, with a view to brain artery trees and spatial point …

CAN Biscio, J Møller - Journal of Computational and Graphical …, 2019 - Taylor & Francis
We start with a simple introduction to topological data analysis where the most popular tool
is called a persistence diagram. Briefly, a persistence diagram is a multiset of points in the …

[图书][B] Epidemiology and geography: principles, methods and tools of spatial analysis

M Souris - 2019 - books.google.com
Localization is involved everywhere in epidemiology: health phenomena often involve
spatial relationships among individuals and risk factors related to geography and …

A one-way ANOVA test for functional data with graphical interpretation

T Mrkvicka, M Myllymaki, M Jilek, U Hahn - arXiv preprint arXiv …, 2016 - arxiv.org
A new functional ANOVA test, with a graphical interpretation of the result, is presented. The
test is an extension of the global envelope test introduced by Myllymaki et al.(2017, Global …

A perceptron for detecting the preferential sampling of locations and times chosen to monitor a spatio-temporal process

J Watson - Spatial Statistics, 2021 - Elsevier
The preferential sampling of locations chosen to observe a spatio-temporal process has
been identified as a major problem across multiple fields. Predictions of the process can be …

Monte Carlo testing in spatial statistics, with applications to spatial residuals

T Mrkvička, S Soubeyrand, M Myllymäki, P Grabarnik… - Spatial Statistics, 2016 - Elsevier
This paper reviews recent advances made in testing in spatial statistics and discussed at the
Spatial Statistics conference in Avignon 2015. The rank and directional quantile envelope …

Analysing spatial point patterns in digital pathology: immune cells in high-grade serous ovarian carcinomas

JA González, J Wrobel, S Vandekar… - arXiv preprint arXiv …, 2023 - arxiv.org
Multiplex immunofluorescence (mIF) imaging technology facilitates the study of the tumour
microenvironment in cancer patients. Due to the capabilities of this emerging bioimaging …

Spatial modeling of biological patterns shows multiscale organization of Arabidopsis thaliana heterochromatin

J Arpòn, K Sakai, V Gaudin, P Andrey - Scientific reports, 2021 - nature.com
The spatial organization in the cell nucleus is tightly linked to genome functions such as
gene regulation. Similarly, specific spatial arrangements of biological components such as …

Revisiting the random shift approach for testing in spatial statistics

T Mrkvička, J Dvořák, JA Gonzalez, J Mateu - Spatial Statistics, 2021 - Elsevier
We consider the problem of non-parametric testing of independence of two components of a
stationary bivariate spatial process. In particular, we revisit the random shift approach that …

Poultry farm distribution models developed along a gradient of intensification

C Chaiban, D Da Re, TP Robinson, M Gilbert… - Preventive veterinary …, 2021 - Elsevier
Efficient planning of measures limiting epidemic spread requires information on farm
locations and sizes (number of animals per farm). However, such data are rarely available …