Parallel tempering: Theory, applications, and new perspectives

DJ Earl, MW Deem - Physical Chemistry Chemical Physics, 2005 - pubs.rsc.org
We review the history of the parallel tempering simulation method. From its origins in data
analysis, the parallel tempering method has become a standard workhorse of …

Bayesian inference in physics

U Von Toussaint - Reviews of Modern Physics, 2011 - APS
Bayesian inference provides a consistent method for the extraction of information from
physics experiments even in ill-conditioned circumstances. The approach provides a unified …

[图书][B] Introduction to nonextensive statistical mechanics: approaching a complex world

C Tsallis - 2009 - Springer
Metaphors, generalizations and unifications are natural and desirable ingredients of the
evolution of scientific theories and concepts. Physics, in particular, obviously walks along …

A parallel tempering algorithm for probabilistic sampling and multimodal optimization

M Sambridge - Geophysical Journal International, 2014 - academic.oup.com
Non-linear inverse problems in the geosciences often involve probabilistic sampling of
multimodal density functions or global optimization and sometimes both. Efficient algorithmic …

[图书][B] Random fields for spatial data modeling

DT Hristopulos - 2020 - Springer
The series aims to: present current and emerging innovations in GIScience; describe new
and robust GIScience methods for use in transdisciplinary problem solving and decision …

Beyond kappa distributions: Exploiting Tsallis statistical mechanics in space plasmas

G Livadiotis, DJ McComas - Journal of Geophysical Research …, 2009 - Wiley Online Library
Empirically derived kappa distributions are becoming increasingly widespread in space
physics as the power law nature of various suprathermal tails is melded with more classical …

Inferential structure determination

W Rieping, M Habeck, M Nilges - Science, 2005 - science.org
Macromolecular structures calculated from nuclear magnetic resonance data are not fully
determined by experimental data but depend on subjective choices in data treatment and …

White matter pathology isolates the hippocampal formation in Alzheimer's disease

DH Salat, DS Tuch, AJW Van der Kouwe, DN Greve… - Neurobiology of …, 2010 - Elsevier
Prior work has demonstrated that the memory dysfunction of Alzheimer's disease (AD) is
accompanied by marked cortical pathology in medial temporal lobe (MTL) gray matter. In …

Entropy defect in thermodynamics

G Livadiotis, DJ McComas - Scientific reports, 2023 - nature.com
This paper describes the physical foundations of the newly discovered “entropy defect” as a
basic concept of thermodynamics. The entropy defect quantifies the change in entropy …

Determining protein structures by combining semireliable data with atomistic physical models by Bayesian inference

JL MacCallum, A Perez, KA Dill - Proceedings of the …, 2015 - National Acad Sciences
More than 100,000 protein structures are now known at atomic detail. However, far more are
not yet known, particularly among large or complex proteins. Often, experimental information …