Evaluation of different computational methods on 5-methylcytosine sites identification
Methylcytosine (m5C) plays an extremely important role in the basic biochemical process.
With the great increase of identified m5C sites in a wide variety of organisms, their …
With the great increase of identified m5C sites in a wide variety of organisms, their …
Comparative analysis and prediction of quorum-sensing peptides using feature representation learning and machine learning algorithms
Quorum-sensing peptides (QSPs) are the signal molecules that are closely associated with
diverse cellular processes, such as cell–cell communication, and gene expression …
diverse cellular processes, such as cell–cell communication, and gene expression …
mAHTPred: a sequence-based meta-predictor for improving the prediction of anti-hypertensive peptides using effective feature representation
Motivation Cardiovascular disease is the primary cause of death globally accounting for
approximately 17.7 million deaths per year. One of the stakes linked with cardiovascular …
approximately 17.7 million deaths per year. One of the stakes linked with cardiovascular …
Exploring sequence-based features for the improved prediction of DNA N4-methylcytosine sites in multiple species
Motivation As one of important epigenetic modifications, DNA N4-methylcytosine (4mC) is
recently shown to play crucial roles in restriction–modification systems. For better …
recently shown to play crucial roles in restriction–modification systems. For better …
Design powerful predictor for mRNA subcellular location prediction in Homo sapiens
Messenger RNAs (mRNAs) shoulder special responsibilities that transmit genetic code from
DNA to discrete locations in the cytoplasm. The locating process of mRNA might provide …
DNA to discrete locations in the cytoplasm. The locating process of mRNA might provide …
iProEP: a computational predictor for predicting promoter
Promoter is a fundamental DNA element located around the transcription start site (TSS) and
could regulate gene transcription. Promoter recognition is of great significance in …
could regulate gene transcription. Promoter recognition is of great significance in …
Perspectives of CRISPR/Cas-mediated cis-engineering in horticulture: unlocking the neglected potential for crop improvement
Q Li, M Sapkota, E van der Knaap - Horticulture research, 2020 - academic.oup.com
Directed breeding of horticultural crops is essential for increasing yield, nutritional content,
and consumer-valued characteristics such as shape and color of the produce. However …
and consumer-valued characteristics such as shape and color of the produce. However …
[HTML][HTML] AtbPpred: a robust sequence-based prediction of anti-tubercular peptides using extremely randomized trees
Mycobacterium tuberculosis is one of the most dangerous pathogens in humans. It acts as
an etiological agent of tuberculosis (TB), infecting almost one-third of the world's population …
an etiological agent of tuberculosis (TB), infecting almost one-third of the world's population …
iRNAD: a computational tool for identifying D modification sites in RNA sequence
Motivation Dihydrouridine (D) is a common RNA post-transcriptional modification found in
eukaryotes, bacteria and a few archaea. The modification can promote the conformational …
eukaryotes, bacteria and a few archaea. The modification can promote the conformational …
Prediction of regulatory motifs from human Chip-sequencing data using a deep learning framework
The identification of transcription factor binding sites and cis-regulatory motifs is a frontier
whereupon the rules governing protein–DNA binding are being revealed. Here, we …
whereupon the rules governing protein–DNA binding are being revealed. Here, we …