Tissue-specific impacts of aging and genetics on gene expression patterns in humans

R Yamamoto, R Chung, JM Vazquez, H Sheng… - Nature …, 2022 - nature.com
Age is the primary risk factor for many common human diseases. Here, we quantify the
relative contributions of genetics and aging to gene expression patterns across 27 tissues …

Translation of neutrally evolving peptides provides a basis for de novo gene evolution

J Ruiz-Orera, P Verdaguer-Grau… - Nature ecology & …, 2018 - nature.com
Accumulating evidence indicates that some protein-coding genes have originated de novo
from previously non-coding genomic sequences. However, the processes underlying de …

Human–chimpanzee fused cells reveal cis-regulatory divergence underlying skeletal evolution

D Gokhman, RM Agoglia, M Kinnebrew, W Gordon… - Nature …, 2021 - nature.com
Gene regulatory divergence is thought to play a central role in determining human-specific
traits. However, our ability to link divergent regulation to divergent phenotypes is limited …

Evolutionary trajectories of new duplicated and putative de novo genes

JC Montañés, M Huertas, X Messeguer… - Molecular biology and …, 2023 - academic.oup.com
The formation of new genes during evolution is an important motor of functional innovation,
but the rate at which new genes originate and the likelihood that they persist over longer …

Insights into the genetic foundations of human communication

SA Graham, P Deriziotis, SE Fisher - Neuropsychology Review, 2015 - Springer
The human capacity to acquire sophisticated language is unmatched in the animal kingdom.
Despite the discontinuity in communicative abilities between humans and other primates …

Functions of intrinsically disordered proteins through evolutionary lenses

M Pajkos, Z Dosztányi - Progress in Molecular Biology and Translational …, 2021 - Elsevier
Protein sequences are the result of an evolutionary process that involves the balancing act
of experimenting with novel mutations and selecting out those that have an undesirable …

Molecular evolution and the decline of purifying selection with age

C Cheng, M Kirkpatrick - Nature communications, 2021 - nature.com
Life history theory predicts that the intensity of selection declines with age, and this trend
should impact how genes expressed at different ages evolve. Here we find consistent …

Two decades of suspect evidence for adaptive molecular evolution—negative selection confounding positive-selection signals

Q Chen, H Yang, X Feng, Q Chen, S Shi… - National Science …, 2022 - academic.oup.com
There has been a large literature in the last two decades affirming adaptive DNA sequence
evolution between species. The main lines of evidence are from (i) the McDonald-Kreitman …

PosiGene: automated and easy-to-use pipeline for genome-wide detection of positively selected genes

A Sahm, M Bens, M Platzer… - Nucleic Acids …, 2017 - academic.oup.com
Many comparative genomics studies aim to find the genetic basis of species-specific
phenotypic traits. A prevailing strategy is to search genome-wide for genes that evolved …

Inferring genome-wide correlations of mutation fitness effects between populations

X Huang, AL Fortier, AJ Coffman… - Molecular Biology …, 2021 - academic.oup.com
The effect of a mutation on fitness may differ between populations depending on
environmental and genetic context, but little is known about the factors that underlie such …