Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop …

JN Cobb, G DeClerck, A Greenberg, R Clark… - Theoretical and Applied …, 2013 - Springer
More accurate and precise phenotyping strategies are necessary to empower high-
resolution linkage mapping and genome-wide association studies and for training genomic …

The genetics of inbreeding depression

D Charlesworth, JH Willis - Nature reviews genetics, 2009 - nature.com
Inbreeding depression—the reduced survival and fertility of offspring of related individuals—
occurs in wild animal and plant populations as well as in humans, indicating that genetic …

A platform for experimental precision medicine: The extended BXD mouse family

DG Ashbrook, D Arends, P Prins, MK Mulligan, S Roy… - Cell systems, 2021 - cell.com
The challenge of precision medicine is to model complex interactions among DNA variants,
phenotypes, development, environments, and treatments. We address this challenge by …

MAGIC populations in crops: current status and future prospects

BE Huang, KL Verbyla, AP Verbyla… - Theoretical and Applied …, 2015 - Springer
Key message MAGIC populations present novel challenges and opportunities in crops due
to their complex pedigree structure. They offer great potential both for dissecting genomic …

A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana

PX Kover, W Valdar, J Trakalo, N Scarcelli… - PLoS …, 2009 - journals.plos.org
Identifying natural allelic variation that underlies quantitative trait variation remains a
fundamental problem in genetics. Most studies have employed either simple synthetic …

The genome architecture of the Collaborative Cross mouse genetic reference population

Collaborative Cross Consortium - Genetics, 2012 - academic.oup.com
Abstract The Collaborative Cross Consortium reports here on the development of a unique
genetic resource population. The Collaborative Cross (CC) is a multiparental recombinant …

Applications and limitations of mouse models for understanding human atherosclerosis

M Von Scheidt, Y Zhao, Z Kurt, C Pan, L Zeng, X Yang… - Cell metabolism, 2017 - cell.com
Most of the biological understanding of mechanisms underlying coronary artery disease
(CAD) derives from studies of mouse models. The identification of multiple CAD loci and …

From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants

C Cavanagh, M Morell, I Mackay, W Powell - Current opinion in plant …, 2008 - Elsevier
The dissection of gene-trait associations and its translation into practice through plant
breeding is a central aspect of modern plant biology. The identification of genes underlying …

Methods for linkage disequilibrium mapping in crops

I Mackay, W Powell - Trends in plant science, 2007 - cell.com
Linkage disequilibrium (LD) mapping in plants detects and locates quantitative trait loci
(QTL) by the strength of the correlation between a trait and a marker. It offers greater …

Genome-wide genetic association of complex traits in heterogeneous stock mice

W Valdar, LC Solberg, D Gauguier, S Burnett… - Nature …, 2006 - nature.com
Difficulties in fine-mapping quantitative trait loci (QTLs) are a major impediment to progress
in the molecular dissection of complex traits in mice. Here we show that genome-wide high …