Xenopus research: metamorphosed by genetics and genomics

RM Harland, RM Grainger - Trends in Genetics, 2011 - cell.com
Research using Xenopus takes advantage of large, abundant eggs and readily manipulated
embryos in addition to conserved cellular, developmental and genomic organization with …

State of the Amphibia 2020: A review of five years of amphibian research and existing resources

MC Womack, E Steigerwald… - Ichthyology & …, 2022 - meridian.allenpress.com
Amphibians are a clade of over 8,400 species that provide unique research opportunities
and challenges. With amphibians undergoing severe global declines, we posit that …

Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes

YB Sun, ZJ Xiong, XY Xiang, SP Liu… - Proceedings of the …, 2015 - National Acad Sciences
The development of efficient sequencing techniques has resulted in large numbers of
genomes being available for evolutionary studies. However, only one genome is available …

High-density sex-specific linkage maps of a European tree frog (Hyla arborea) identify the sex chromosome without information on offspring sex

A Brelsford, C Dufresnes, N Perrin - Heredity, 2016 - nature.com
Identifying homology between sex chromosomes of different species is essential to
understanding the evolution of sex determination. Here, we show that the identity of a …

Three-dimensional folding dynamics of the Xenopus tropicalis genome

L Niu, W Shen, Z Shi, Y Tan, N He, J Wan, J Sun… - Nature Genetics, 2021 - nature.com
Animal interphase chromosomes are organized into topologically associating domains
(TADs). How TADs are formed is not fully understood. Here, we combined high-throughput …

RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development

MH Tan, KF Au, AL Yablonovitch, AE Wills… - Genome …, 2013 - genome.cshlp.org
The Xenopus embryo has provided key insights into fate specification, the cell cycle, and
other fundamental developmental and cellular processes, yet a comprehensive …

Evolution of the B7 family: co-evolution of B7H6 and NKp30, identification of a new B7 family member, B7H7, and of B7's historical relationship with the MHC

MF Flajnik, T Tlapakova, MF Criscitiello, V Krylov… - Immunogenetics, 2012 - Springer
The B7 family of genes is essential in the regulation of the adaptive immune system. Most B7
family members contain both variable (V)-and constant (C)-type domains of the …

Coexistence of Y, W, and Z sex chromosomes in Xenopus tropicalis

ÁS Roco, AW Olmstead, SJ Degitz… - Proceedings of the …, 2015 - National Acad Sciences
Homomorphic sex chromosomes and rapid turnover of sex-determining genes can
complicate establishing the sex chromosome system operating in a given species. This …

A chromosome-scale genome assembly and dense genetic map for Xenopus tropicalis

T Mitros, JB Lyons, AM Session, J Jenkins, S Shu… - Developmental …, 2019 - Elsevier
Abstract The Western clawed frog Xenopus tropicalis is a diploid model system for both frog
genetics and developmental biology, complementary to the paleotetraploid X. laevis. Here …

A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut

ED Nagy, Y Guo, S Tang, JE Bowers, RA Okashah… - BMC genomics, 2012 - Springer
Abstract Background Cultivated peanut (Arachis hypogaea) is an allotetraploid species
whose ancestral genomes are most likely derived from the A-genome species, A …