Critical phenomena and renormalization-group theory

A Pelissetto, E Vicari - Physics Reports, 2002 - Elsevier
We review results concerning the critical behavior of spin systems at equilibrium. We
consider the Ising and the general O (N)-symmetric universality classes, including the N→ 0 …

Monte Carlo simulation of lattice models for macromolecules

K Kremer, K Binder - Computer Physics Reports, 1988 - Elsevier
This article reviews various methods for the Monte Carlo simulation of models for long
flexible polymer chains, namely self-avoiding random walks at various lattices. This problem …

The pivot algorithm: A highly efficient Monte Carlo method for the self-avoiding walk

N Madras, AD Sokal - Journal of Statistical Physics, 1988 - Springer
The pivot algorithm is a dynamic Monte Carlo algorithm, first invented by Lal, which
generates self-avoiding walks (SAWs) in a canonical (fixed-N) ensemble with free endpoints …

Critical exponents, hyperscaling, and universal amplitude ratios for two-and three-dimensional self-avoiding walks

B Li, N Madras, AD Sokal - Journal of Statistical Physics, 1995 - Springer
We make a high-precision Monte Carlo study of two-and three-dimensional self-avoiding
walks (SAWs) of length up to 80,000 steps, using the pivot algorithm and the Karp-Luby …

Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering

AYL Sim, J Lipfert, D Herschlag, S Doniach - Physical Review E—Statistical …, 2012 - APS
Short single-stranded nucleic acids are ubiquitous in biological processes; understanding
their physical properties provides insights to nucleic acid folding and dynamics. We used …

New Monte Carlo method for the self-avoiding walk

A Berretti, AD Sokal - Journal of Statistical Physics, 1985 - Springer
We introduce a new Monte Carlo algorithm for the self-avoiding walk (SAW), and show that it
is particularly efficient in the critical region (long chains). We also introduce new and more …

Monte Carlo methods for the self-avoiding walk

AD Sokal - arXiv preprint hep-lat/9405016, 1994 - arxiv.org
hep-lat/9405016 17 May 1994 Contents Page 1 hep-lat/9405016 17 May 1994 MONTE
CARLO METHODS FOR THE SELF-AVOIDING WALK ALAN D. SOKAL Department of Physics …

Expansion of a polymer chain with excluded volume interaction

M Muthukumar, BG Nickel - The Journal of chemical physics, 1987 - pubs.aip.org
We present explicit values of the mean square end‐to‐end distance< R 2> of a linear
flexible chain for all values of the excluded volume parameter z> 0 in space dimension 3 …

Emerging consensus on the collapse of unfolded and intrinsically disordered proteins in water

RB Best - Current opinion in structural biology, 2020 - Elsevier
Establishing the degree of collapse of unfolded or disordered proteins is a fundamental
problem in biophysics, because of its relation to protein folding and to the function of …

Macromolecular crowding and intrinsically disordered proteins: a polymer physics perspective

J Cubuk, A Soranno - ChemSystemsChem, 2022 - Wiley Online Library
The cell is a crowded environment where a relevant fraction of the available space is
occupied by proteins, nucleic acids, and metabolites. Here we discuss recent advancements …