DNA sequencing at 40: past, present and future

J Shendure, S Balasubramanian, GM Church… - Nature, 2017 - nature.com
This review commemorates the 40th anniversary of DNA sequencing, a period in which we
have already witnessed multiple technological revolutions and a growth in scale from a few …

[HTML][HTML] Long walk to genomics: History and current approaches to genome sequencing and assembly

AM Giani, GR Gallo, L Gianfranceschi… - Computational and …, 2020 - Elsevier
Genomes represent the starting point of genetic studies. Since the discovery of DNA
structure, scientists have devoted great efforts to determine their sequence in an exact way …

The cityscapes dataset for semantic urban scene understanding

M Cordts, M Omran, S Ramos… - Proceedings of the …, 2016 - openaccess.thecvf.com
Visual understanding of complex urban street scenes is an enabling factor for a wide range
of applications. Object detection has benefited enormously from large-scale datasets …

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

R Seshadri, SC Leahy, GT Attwood, KH Teh… - Nature …, 2018 - nature.com
Productivity of ruminant livestock depends on the rumen microbiota, which ferment
indigestible plant polysaccharides into nutrients used for growth. Understanding the …

Genomes of subaerial Zygnematophyceae provide insights into land plant evolution

S Cheng, W Xian, Y Fu, B Marin, J Keller, T Wu, W Sun… - Cell, 2019 - cell.com
The transition to a terrestrial environment, termed terrestrialization, is generally regarded as
a pivotal event in the evolution and diversification of the land plant flora that changed the …

Direct determination of diploid genome sequences

NI Weisenfeld, V Kumar, P Shah, DM Church… - Genome …, 2017 - genome.cshlp.org
Determining the genome sequence of an organism is challenging, yet fundamental to
understanding its biology. Over the past decade, thousands of human genomes have been …

Comparative genomics of the major parasitic worms

Nature genetics, 2019 - nature.com
Parasitic nematodes (roundworms) and platyhelminths (flatworms) cause debilitating
chronic infections of humans and animals, decimate crop production and are a major …

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

A Bankevich, S Nurk, D Antipov… - Journal of …, 2012 - liebertpub.com
The lion's share of bacteria in various environments cannot be cloned in the laboratory and
thus cannot be sequenced using existing technologies. A major goal of single-cell genomics …

De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits

Y Li, G Zhou, J Ma, W Jiang, L Jin, Z Zhang… - Nature …, 2014 - nature.com
Wild relatives of crops are an important source of genetic diversity for agriculture, but their
gene repertoire remains largely unexplored. We report the establishment and analysis of a …

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

Y Peng, HCM Leung, SM Yiu, FYL Chin - Bioinformatics, 2012 - academic.oup.com
Motivation: Next-generation sequencing allows us to sequence reads from a microbial
environment using single-cell sequencing or metagenomic sequencing technologies …