Machine learning methods for small data challenges in molecular science

B Dou, Z Zhu, E Merkurjev, L Ke, L Chen… - Chemical …, 2023 - ACS Publications
Small data are often used in scientific and engineering research due to the presence of
various constraints, such as time, cost, ethics, privacy, security, and technical limitations in …

Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W Jin, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

Machine learning enables interpretable discovery of innovative polymers for gas separation membranes

J Yang, L Tao, J He, JR McCutcheon, Y Li - Science Advances, 2022 - science.org
Polymer membranes perform innumerable separations with far-reaching environmental
implications. Despite decades of research, design of new membrane materials remains a …

Closed-loop optimization of general reaction conditions for heteroaryl Suzuki-Miyaura coupling

NH Angello, V Rathore, W Beker, A Wołos, ER Jira… - Science, 2022 - science.org
General conditions for organic reactions are important but rare, and efforts to identify them
usually consider only narrow regions of chemical space. Discovering more general reaction …

Drug discovery with explainable artificial intelligence

J Jiménez-Luna, F Grisoni, G Schneider - Nature Machine Intelligence, 2020 - nature.com
Deep learning bears promise for drug discovery, including advanced image analysis,
prediction of molecular structure and function, and automated generation of innovative …

Fast and uncertainty-aware directional message passing for non-equilibrium molecules

J Gasteiger, S Giri, JT Margraf… - arXiv preprint arXiv …, 2020 - arxiv.org
Many important tasks in chemistry revolve around molecules during reactions. This requires
predictions far from the equilibrium, while most recent work in machine learning for …

Applications of deep learning in molecule generation and molecular property prediction

WP Walters, R Barzilay - Accounts of chemical research, 2020 - ACS Publications
Conspectus Recent advances in computer hardware and software have led to a revolution
in deep neural networks that has impacted fields ranging from language translation to …

Deep learning methods for molecular representation and property prediction

Z Li, M Jiang, S Wang, S Zhang - Drug Discovery Today, 2022 - Elsevier
Highlights•The deep learning method could effectively represent the molecular structure and
predict molecular property through diversified models.•One, two, and three-dimensional …

Accelerating high-throughput virtual screening through molecular pool-based active learning

DE Graff, EI Shakhnovich, CW Coley - Chemical science, 2021 - pubs.rsc.org
Structure-based virtual screening is an important tool in early stage drug discovery that
scores the interactions between a target protein and candidate ligands. As virtual libraries …

A novel approach to uncertainty quantification in groundwater table modeling by automated predictive deep learning

A Abbaszadeh Shahri, C Shan, S Larsson - Natural Resources Research, 2022 - Springer
Uncertainty quantification (UQ) is an important benchmark to assess the performance of
artificial intelligence (AI) and particularly deep learning ensembled-based models. However …