Formation of the Isthmus of Panama

A O'Dea, HA Lessios, AG Coates, RI Eytan… - Science …, 2016 - science.org
The formation of the Isthmus of Panama stands as one of the greatest natural events of the
Cenozoic, driving profound biotic transformations on land and in the oceans. Some recent …

Bayesian molecular dating: opening up the black box

L Bromham, S Duchêne, X Hua, AM Ritchie… - Biological …, 2018 - Wiley Online Library
Molecular dating analyses allow evolutionary timescales to be estimated from genetic data,
offering an unprecedented capacity for investigating the evolutionary past of all species …

The critically endangered vaquita is not doomed to extinction by inbreeding depression

JA Robinson, CC Kyriazis, SF Nigenda-Morales… - Science, 2022 - science.org
In cases of severe wildlife population decline, a key question is whether recovery efforts will
be impeded by genetic factors, such as inbreeding depression. Decades of excess mortality …

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

RO Prum, JS Berv, A Dornburg, DJ Field, JP Townsend… - Nature, 2015 - nature.com
Although reconstruction of the phylogeny of living birds has progressed tremendously in the
last decade, the evolutionary history of Neoaves—a clade that encompasses nearly all living …

A metacalibrated time‐tree documents the early rise of flowering plant phylogenetic diversity

S Magallón, S Gómez‐Acevedo… - New …, 2015 - Wiley Online Library
The establishment of modern terrestrial life is indissociable from angiosperm evolution.
While available molecular clock estimates of angiosperm age range from the Paleozoic to …

Phylogenomic resolution of the cetacean tree of life using target sequence capture

MR McGowen, G Tsagkogeorga… - Systematic …, 2020 - academic.oup.com
The evolution of cetaceans, from their early transition to an aquatic lifestyle to their
subsequent diversification, has been the subject of numerous studies. However, although …

[HTML][HTML] Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

AD Foote, N Vijay, MC Ávila-Arcos, RW Baird… - Nature …, 2016 - nature.com
Analysing population genomic data from killer whale ecotypes, which we estimate have
globally radiated within less than 250,000 years, we show that genetic structuring including …

[HTML][HTML] So many genes, so little time: a practical approach to divergence-time estimation in the genomic era

SA Smith, JW Brown, JF Walker - PloS one, 2018 - journals.plos.org
Phylogenomic datasets have been successfully used to address questions involving
evolutionary relationships, patterns of genome structure, signatures of selection, and gene …

Theoretical foundation of the RelTime method for estimating divergence times from variable evolutionary rates

K Tamura, Q Tao, S Kumar - Molecular biology and evolution, 2018 - academic.oup.com
RelTime estimates divergence times by relaxing the assumption of a strict molecular clock in
a phylogeny. It shows excellent performance in estimating divergence times for both …

Baleen boom and bust: a synthesis of mysticete phylogeny, diversity and disparity

FG Marx, RE Fordyce - Royal Society Open Science, 2015 - royalsocietypublishing.org
A new, fully dated total-evidence phylogeny of baleen whales (Mysticeti) shows that
evolutionary phases correlate strongly with Caenozoic modernization of the oceans and …