Partial least squares-discriminant analysis (PLS-DA) for classification of high-dimensional (HD) data: a review of contemporary practice strategies and knowledge …

LC Lee, CY Liong, AA Jemain - Analyst, 2018 - pubs.rsc.org
Partial least squares-discriminant analysis (PLS-DA) is a versatile algorithm that can be
used for predictive and descriptive modelling as well as for discriminative variable selection …

PLS/OPLS models in metabolomics: the impact of permutation of dataset rows on the K-fold cross-validation quality parameters

MN Triba, L Le Moyec, R Amathieu, C Goossens… - Molecular …, 2015 - pubs.rsc.org
Among all the software packages available for discriminant analyses based on projection to
latent structures (PLS-DA) or orthogonal projection to latent structures (OPLS-DA), SIMCA …

Multiple skin lesions diagnostics via integrated deep convolutional networks for segmentation and classification

MA Al-Masni, DH Kim, TS Kim - Computer methods and programs in …, 2020 - Elsevier
Background and objective Computer automated diagnosis of various skin lesions through
medical dermoscopy images remains a challenging task. Methods In this work, we propose …

Skin lesion segmentation in dermoscopy images via deep full resolution convolutional networks

MA Al-Masni, MA Al-Antari, MT Choi, SM Han… - Computer methods and …, 2018 - Elsevier
Background and objective Automatic segmentation of skin lesions in dermoscopy images is
still a challenging task due to the large shape variations and indistinct boundaries of the …

MissForest—non-parametric missing value imputation for mixed-type data

DJ Stekhoven, P Bühlmann - Bioinformatics, 2012 - academic.oup.com
Motivation: Modern data acquisition based on high-throughput technology is often facing the
problem of missing data. Algorithms commonly used in the analysis of such large-scale data …

Translational biomarker discovery in clinical metabolomics: an introductory tutorial

J Xia, DI Broadhurst, M Wilson, DS Wishart - Metabolomics, 2013 - Springer
Metabolomics is increasingly being applied towards the identification of biomarkers for
disease diagnosis, prognosis and risk prediction. Unfortunately among the many published …

Data analysis strategies for targeted and untargeted LC-MS metabolomic studies: Overview and workflow

E Gorrochategui, J Jaumot, S Lacorte… - TrAC Trends in Analytical …, 2016 - Elsevier
Data analysis is a very challenging task in LC-MS metabolomic studies. The use of powerful
analytical techniques (eg, high-resolution mass spectrometry) provides high-dimensional …

Double-check: validation of diagnostic statistics for PLS-DA models in metabolomics studies

E Szymańska, E Saccenti, AK Smilde, JA Westerhuis - Metabolomics, 2012 - Springer
Abstract Partial Least Squares-Discriminant Analysis (PLS-DA) is a PLS regression method
with a special binary 'dummy'y-variable and it is commonly used for classification purposes …

Repeated double cross validation

P Filzmoser, B Liebmann… - Journal of Chemometrics …, 2009 - Wiley Online Library
Repeated double cross validation (rdCV) is a strategy for (a) optimizing the complexity of
regression models and (b) for a realistic estimation of prediction errors when the model is …

[图书][B] Chemometrics with R

R Wehrens - 2011 - Springer
In the last twenty years, the life sciences have seen a dramatic increase in the size and
number of data sets. Simple sensing devices in many cases offer real-time data streaming …