Type V secretion: mechanism (s) of autotransport through the bacterial outer membrane

JC Leo, I Grin, D Linke - Philosophical Transactions of …, 2012 - royalsocietypublishing.org
Autotransport in Gram-negative bacteria denotes the ability of surface-localized proteins to
cross the outer membrane (OM) autonomously. Autotransporters perform this task with the …

The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis

V Alva, SZ Nam, J Söding, AN Lupas - Nucleic acids research, 2016 - academic.oup.com
Abstract The MPI Bioinformatics Toolkit (http://toolkit. tuebingen. mpg. de) is an open,
interactive web service for comprehensive and collaborative protein bioinformatic analysis. It …

Transferable immunoglobulin A–Coated Odoribacter splanchnicus in responders to fecal microbiota transplantation for ulcerative colitis limits colonic inflammation

SF Lima, L Gogokhia, M Viladomiu, L Chou, G Putzel… - Gastroenterology, 2022 - Elsevier
Background & Aims Fecal microbiota transplantation (FMT) is an emerging treatment
modality for ulcerative colitis (UC). Several randomized controlled trials have shown efficacy …

IgA-coated E. coli enriched in Crohn's disease spondyloarthritis promote TH17-dependent inflammation

M Viladomiu, C Kivolowitz, A Abdulhamid… - Science translational …, 2017 - science.org
Peripheral spondyloarthritis (SpA) is a common extraintestinal manifestation in patients with
active inflammatory bowel disease (IBD) characterized by inflammatory enthesitis, dactylitis …

Yersinia adhesins: An arsenal for infection

N Chauhan, A Wrobel, M Skurnik… - PROTEOMICS–Clinical …, 2016 - Wiley Online Library
The Yersiniae are a group of Gram‐negative coccobacilli inhabiting a wide range of
habitats. The genus harbors three recognized human pathogens: Y. enterocolitica and Y …

Highly active and specific tyrosine ammonia-lyases from diverse origins enable enhanced production of aromatic compounds in bacteria and Saccharomyces …

CB Jendresen, SG Stahlhut, M Li… - Applied and …, 2015 - Am Soc Microbiol
Phenylalanine and tyrosine ammonia-lyases form cinnamic acid and p-coumaric acid, which
are precursors of a wide range of aromatic compounds of biotechnological interest. Lack of …

SyntTax: a web server linking synteny to prokaryotic taxonomy

J Oberto - BMC bioinformatics, 2013 - Springer
Background The study of the conservation of gene order or synteny constitutes a powerful
methodology to assess the orthology of genomic regions and to predict functional …

GCM and gcType in 2024: comprehensive resources for microbial strains and genomic data<? mode longmeta?>

G Fan, Q Sun, Y Sun, D Liu, S Li, M Li… - Nucleic Acids …, 2025 - academic.oup.com
Microbial culture collections play a crucial role in the collection, maintenance, and
distribution of quality-assured living microbial strains, along with their associated phenotypic …

Metabolite-based mutualism enhances hydrogen production in a two-species microbial consortium

S Wang, H Tang, F Peng, X Yu, H Su, P Xu… - Communications …, 2019 - nature.com
Sustainable hydrogen production from renewable and low-cost substrates is very important
to mitigate environmental and energy-related issues. Microbial consortia are promising for …

MGcV: the microbial genomic context viewer for comparative genome analysis

L Overmars, R Kerkhoven, RJ Siezen, C Francke - BMC genomics, 2013 - Springer
Background Conserved gene context is used in many types of comparative genome
analyses. It is used to provide leads on gene function, to guide the discovery of regulatory …