LC-MS-based metabolomics

B Zhou, JF Xiao, L Tuli, HW Ressom - Molecular BioSystems, 2012 - pubs.rsc.org
Metabolomics aims at identification and quantitation of small molecules involved in
metabolic reactions. LC-MS has enjoyed a growing popularity as the platform for …

Advanced biotechnology: Metabolically engineered cells for the bio‐based production of chemicals and fuels, materials, and health‐care products

J Becker, C Wittmann - Angewandte Chemie International …, 2015 - Wiley Online Library
Corynebacterium glutamicum, Escherichia coli, and Saccharomyces cerevisiae in particular,
have become established as important industrial workhorses in biotechnology. Recent years …

High-throughput, accurate mass metabolome profiling of cellular extracts by flow injection–time-of-flight mass spectrometry

T Fuhrer, D Heer, B Begemann, N Zamboni - Analytical chemistry, 2011 - ACS Publications
Direct injection of samples on high-resolving mass spectrometers is an effective way to
maximize analytical throughput and yet allow analyte discrimination in complex samples by …

Current metabolomics: practical applications

SP Putri, Y Nakayama, F Matsuda, T Uchikata… - Journal of bioscience …, 2013 - Elsevier
The field of metabolomics continues to grow rapidly over the last decade and has been
proven to be a powerful technology in predicting and explaining complex phenotypes in …

Extensive exometabolome analysis reveals extended overflow metabolism in various microorganisms

N Paczia, A Nilgen, T Lehmann, J Gätgens… - Microbial cell …, 2012 - Springer
Overflow metabolism is well known for yeast, bacteria and mammalian cells. It typically
occurs under glucose excess conditions and is characterized by excretions of by-products …

Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective

WC van Heeswijk, HV Westerhoff… - … and Molecular Biology …, 2013 - Am Soc Microbiol
We present a comprehensive overview of the hierarchical network of intracellular processes
revolving around central nitrogen metabolism in Escherichia coli. The hierarchy intertwines …

Ultrahigh performance liquid chromatography− tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites

JM Buescher, S Moco, U Sauer, N Zamboni - Analytical chemistry, 2010 - ACS Publications
Quantification of metabolites is of pivotal relevance in biology, where it complements more
established omics techniques such as transcriptomics and proteomics. Here, we present a …

Quantitative evaluation of intracellular metabolite extraction techniques for yeast metabolomics

AB Canelas, A ten Pierick, C Ras, RM Seifar… - Analytical …, 2009 - ACS Publications
Accurate determination of intracellular metabolite levels requires well-validated procedures
for sampling and sample treatment. Several methods exist for metabolite extraction, but the …

Designing metabolic division of labor in microbial communities

M Thommes, T Wang, Q Zhao, IC Paschalidis… - MSystems, 2019 - Am Soc Microbiol
Microbes face a trade-off between being metabolically independent and relying on
neighboring organisms for the supply of some essential metabolites. This balance of …

Maintenance of ATP homeostasis triggers metabolic shifts in gas-fermenting acetogens

K Valgepea, RSP Lemgruber, K Meaghan… - Cell systems, 2017 - cell.com
Acetogens are promising cell factories for producing fuels and chemicals from waste
feedstocks via gas fermentation, but quantitative characterization of carbon, energy, and …