Marginal likelihood computation for model selection and hypothesis testing: an extensive review

F Llorente, L Martino, D Delgado, J Lopez-Santiago - SIAM review, 2023 - SIAM
This is an up-to-date introduction to, and overview of, marginal likelihood computation for
model selection and hypothesis testing. Computing normalizing constants of probability …

Estimating the evidence–a review

N Friel, J Wyse - Statistica Neerlandica, 2012 - Wiley Online Library
The model evidence is a vital quantity in the comparison of statistical models under the
Bayesian paradigm. This study presents a review of commonly used methods. We outline …

Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

G Baele, P Lemey, T Bedford, A Rambaut… - Molecular biology …, 2012 - academic.oup.com
Recent developments in marginal likelihood estimation for model selection in the field of
Bayesian phylogenetics and molecular evolution have emphasized the poor performance of …

Approximate Bayesian computational methods

JM Marin, P Pudlo, CP Robert, RJ Ryder - Statistics and computing, 2012 - Springer
Abstract Approximate Bayesian Computation (ABC) methods, also known as likelihood-free
techniques, have appeared in the past ten years as the most satisfactory approach to …

Accurate model selection of relaxed molecular clocks in Bayesian phylogenetics

G Baele, WLS Li, AJ Drummond… - Molecular biology …, 2012 - academic.oup.com
Recent implementations of path sampling (PS) and stepping-stone sampling (SS) have
been shown to outperform the harmonic mean estimator (HME) and a posterior simulation …

Improving marginal likelihood estimation for Bayesian phylogenetic model selection

W Xie, PO Lewis, Y Fan, L Kuo, MH Chen - Systematic biology, 2011 - academic.oup.com
The marginal likelihood is commonly used for comparing different evolutionary models in
Bayesian phylogenetics and is the central quantity used in computing Bayes Factors for …

[图书][B] Bayesian modeling using WinBUGS

I Ntzoufras - 2011 - books.google.com
A hands-on introduction to the principles of Bayesian modeling using WinBUGS Bayesian
Modeling Using WinBUGS provides an easily accessible introduction to the use of …

[图书][B] Markov chain Monte Carlo: stochastic simulation for Bayesian inference

D Gamerman, HF Lopes - 2006 - taylorfrancis.com
While there have been few theoretical contributions on the Markov Chain Monte Carlo
(MCMC) methods in the past decade, current understanding and application of MCMC to the …

Unified framework to evaluate panmixia and migration direction among multiple sampling locations

P Beerli, M Palczewski - Genetics, 2010 - academic.oup.com
For many biological investigations, groups of individuals are genetically sampled from
several geographic locations. These sampling locations often do not reflect the genetic …

Robust Bayesian inference via coarsening

JW Miller, DB Dunson - Journal of the American Statistical …, 2019 - Taylor & Francis
The standard approach to Bayesian inference is based on the assumption that the
distribution of the data belongs to the chosen model class. However, even a small violation …