Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases

DB Kell - BMC medical genomics, 2009 - Springer
Background The production of peroxide and superoxide is an inevitable consequence of
aerobic metabolism, and while these particular'reactive oxygen species'(ROSs) can exhibit a …

Boolean network models of cellular regulation: prospects and limitations

S Bornholdt - Journal of the Royal Society Interface, 2008 - royalsocietypublishing.org
Computer models are valuable tools towards an understanding of the cell's biochemical
regulatory machinery. Possible levels of description of such models range from modelling …

[图书][B] Dynamical processes on complex networks

A Barrat, M Barthelemy, A Vespignani - 2008 - books.google.com
The availability of large data sets has allowed researchers to uncover complex properties
such as large-scale fluctuations and heterogeneities in many networks, leading to the …

Cell fates as high-dimensional attractor states of a complex gene regulatory network

S Huang, G Eichler, Y Bar-Yam, DE Ingber - Physical review letters, 2005 - APS
Cells in multicellular organisms switch between distinct cell fates, such as proliferation or
differentiation into specialized cell types. Genome-wide gene regulatory networks govern …

The cell collective: toward an open and collaborative approach to systems biology

T Helikar, B Kowal, S McClenathan, M Bruckner… - BMC systems …, 2012 - Springer
Background Despite decades of new discoveries in biomedical research, the overwhelming
complexity of cells has been a significant barrier to a fundamental understanding of how …

A Gene Regulatory Network Model for Cell-Fate Determination during Arabidopsis thaliana Flower Development That Is Robust and Recovers Experimental Gene …

C Espinosa-Soto, P Padilla-Longoria… - The Plant …, 2004 - academic.oup.com
Flowers are icons in developmental studies of complex structures. The vast majority of
250,000 angiosperm plant species have flowers with a conserved organ plan bearing …

Innovation and robustness in complex regulatory gene networks

S Ciliberti, OC Martin, A Wagner - Proceedings of the …, 2007 - National Acad Sciences
The history of life involves countless evolutionary innovations, a steady stream of ingenuity
that has been flowing for more than 3 billion years. Very little is known about the principles of …

[图书][B] Phase transitions

RV Solé - 2011 - books.google.com
Phase transitions--changes between different states of organization in a complex system--
have long helped to explain physics concepts, such as why water freezes into a solid or …

Robustness can evolve gradually in complex regulatory gene networks with varying topology

S Ciliberti, OC Martin, A Wagner - PLoS computational biology, 2007 - journals.plos.org
The topology of cellular circuits (the who-interacts-with-whom) is key to understand their
robustness to both mutations and noise. The reason is that many biochemical parameters …

Genetic networks with canalyzing Boolean rules are always stable

S Kauffman, C Peterson… - Proceedings of the …, 2004 - National Acad Sciences
We determine stability and attractor properties of random Boolean genetic network models
with canalyzing rules for a variety of architectures. For all power law, exponential, and flat in …