The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology

TE Sandberg, MJ Salazar, LL Weng, BO Palsson… - Metabolic …, 2019 - Elsevier
Harnessing the process of natural selection to obtain and understand new microbial
phenotypes has become increasingly possible due to advances in culturing techniques …

Escherichia coli as a host for metabolic engineering

S Pontrelli, TY Chiu, EI Lan, FYH Chen, P Chang… - Metabolic …, 2018 - Elsevier
Over the past century, Escherichia coli has become one of the best studied organisms on
earth. Features such as genetic tractability, favorable growth conditions, well characterized …

Adaptive laboratory evolution–principles and applications for biotechnology

M Dragosits, D Mattanovich - Microbial cell factories, 2013 - Springer
Adaptive laboratory evolution is a frequent method in biological studies to gain insights into
the basic mechanisms of molecular evolution and adaptive changes that accumulate in …

The molecular diversity of adaptive convergence

O Tenaillon, A Rodríguez-Verdugo, RL Gaut… - Science, 2012 - science.org
To estimate the number and diversity of beneficial mutations, we experimentally evolved 115
populations of Escherichia coli to 42.2° C for 2000 generations and sequenced one genome …

Exploiting nongenetic cell-to-cell variation for enhanced biosynthesis

Y Xiao, CH Bowen, D Liu, F Zhang - Nature chemical biology, 2016 - nature.com
Biosynthesis enables renewable production of manifold compounds, yet often biosynthetic
performance must be improved for it to be economically feasible. Nongenetic, cell-to-cell …

Rapid evolution of silver nanoparticle resistance in Escherichia coli

JL Graves Jr, M Tajkarimi, Q Cunningham… - Frontiers in …, 2015 - frontiersin.org
The recent exponential increase in the use of engineered nanoparticles (eNPs) means both
greater intentional and unintentional exposure of eNPs to microbes. Intentional use includes …

Elucidating the molecular architecture of adaptation via evolve and resequence experiments

A Long, G Liti, A Luptak, O Tenaillon - Nature Reviews Genetics, 2015 - nature.com
Evolve and resequence (E&R) experiments use experimental evolution to adapt populations
to a novel environment, then next-generation sequencing to analyse genetic changes. They …

Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium

RA LaCroix, TE Sandberg, EJ O'Brien… - Applied and …, 2015 - Am Soc Microbiol
Adaptive laboratory evolution (ALE) has emerged as an effective tool for scientific discovery
and addressing biotechnological needs. Much of ALE's utility is derived from reproducibly …

Adaptive laboratory evolution—harnessing the power of biology for metabolic engineering

VA Portnoy, D Bezdan, K Zengler - Current opinion in biotechnology, 2011 - Elsevier
Adaptive laboratory evolution (ALE) strategies allow for the metabolic engineering of
microorganisms by combining genetic variation with the selection of beneficial mutations in …

Microbial laboratory evolution in the era of genome‐scale science

TM Conrad, NE Lewis, BØ Palsson - Molecular systems biology, 2011 - embopress.org
Laboratory evolution studies provide fundamental biological insight through direct
observation of the evolution process. They not only enable testing of evolutionary theory and …