Mycovirus diversity and evolution revealed/inferred from recent studies

H Kondo, L Botella, N Suzuki - Annual Review of …, 2022 - annualreviews.org
High-throughput virome analyses with various fungi, from cultured or uncultured sources,
have led to the discovery of diverse viruses with unique genome structures and even neo …

Overview of lethal human coronaviruses

B Chen, EK Tian, B He, L Tian, R Han… - Signal transduction and …, 2020 - nature.com
Coronavirus infections of multiple origins have spread to date worldwide, causing severe
respiratory diseases. Seven coronaviruses that infect humans have been identified: HCoV …

Cryptic and abundant marine viruses at the evolutionary origins of Earth's RNA virome

AA Zayed, JM Wainaina, G Dominguez-Huerta… - Science, 2022 - science.org
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem
players, RNA viruses are insufficiently studied outside disease settings. In this study, we …

Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny

RC Edgar - Nature Communications, 2022 - nature.com
Multiple sequence alignments are widely used to infer evolutionary relationships, enabling
inferences of structure, function, and phylogeny. Standard practice is to construct one …

RNA viromes from terrestrial sites across China expand environmental viral diversity

YM Chen, S Sadiq, JH Tian, X Chen, XD Lin… - Nature …, 2022 - nature.com
Environmental RNA viruses are ubiquitous and diverse, and probably have important
ecological and biogeochemical impacts. Understanding the global diversity of RNA viruses …

[HTML][HTML] Expansion of the global RNA virome reveals diverse clades of bacteriophages

U Neri, YI Wolf, S Roux, AP Camargo, B Lee… - Cell, 2022 - cell.com
High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA
virome. Mining 5,150 diverse metatranscriptomes uncovered> 2.5 million RNA virus contigs …

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

PJ Walker, SG Siddell, EJ Lefkowitz, AR Mushegian… - 2020 - Springer
This article reports the changes to virus classification and taxonomy approved and ratified by
the International Committee on Taxonomy of Viruses (ICTV) in March 2020. The entire ICTV …

Petabase-scale sequence alignment catalyses viral discovery

RC Edgar, B Taylor, V Lin, T Altman, P Barbera… - Nature, 2022 - nature.com
Public databases contain a planetary collection of nucleic acid sequences, but their
systematic exploration has been inhibited by a lack of efficient methods for searching this …

2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

JH Kuhn, S Adkins, D Alioto, SV Alkhovsky… - Archives of …, 2020 - Springer
In March 2020, following the annual International Committee on Taxonomy of Viruses (ICTV)
ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and …

[HTML][HTML] Why does viral RNA sometimes persist after recovery from acute infections?

DE Griffin - PLoS biology, 2022 - journals.plos.org
DNA viruses often persist in the body of their host, becoming latent and recurring many
months or years later. By contrast, most RNA viruses cause acute infections that are cleared …