Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science

DR Unni, SAT Moxon, M Bada, M Brush… - Clinical and …, 2022 - Wiley Online Library
Within clinical, biomedical, and translational science, an increasing number of projects are
adopting graphs for knowledge representation. Graph‐based data models elucidate the …

GCN-MF: disease-gene association identification by graph convolutional networks and matrix factorization

P Han, P Yang, P Zhao, S Shang, Y Liu… - Proceedings of the 25th …, 2019 - dl.acm.org
Discovering disease-gene association is a fundamental and critical biomedical task, which
assists biologists and physicians to discover pathogenic mechanism of syndromes. With …

Broad-coverage biomedical relation extraction with SemRep

H Kilicoglu, G Rosemblat, M Fiszman, D Shin - BMC bioinformatics, 2020 - Springer
Background In the era of information overload, natural language processing (NLP)
techniques are increasingly needed to support advanced biomedical information …

[HTML][HTML] Recent advances in predicting gene–disease associations

K Opap, N Mulder - F1000Research, 2017 - ncbi.nlm.nih.gov
Deciphering gene–disease association is a crucial step in designing therapeutic strategies
against diseases. There are experimental methods for identifying gene–disease …

Drug prioritization using the semantic properties of a knowledge graph

TB Malas, WJ Vlietstra, R Kudrin, S Starikov… - Scientific reports, 2019 - nature.com
Compounds that are candidates for drug repurposing can be ranked by leveraging
knowledge available in the biomedical literature and databases. This knowledge, spread …

Fair digital twins for data-intensive research

E Schultes, M Roos, LO Bonino da Silva Santos… - Frontiers in big …, 2022 - frontiersin.org
Although all the technical components supporting fully orchestrated Digital Twins (DT)
currently exist, what remains missing is a conceptual clarification and analysis of a more …

VCP expression decrease as a biomarker of preclinical and early clinical stages of Parkinson's disease

A Alieva, M Rudenok, E Filatova, A Karabanov… - Scientific reports, 2020 - nature.com
Valosin-containing human protein (VCP) or p97 performs enzyme functions associated with
the maintenance of protein homeostasis and control of protein quality. Disruption of its …

Expression analysis of genes involved in transport processes in mice with MPTP-induced model of Parkinson's disease

MM Rudenok, MI Shadrina, EV Filatova, IN Rybolovlev… - Life, 2022 - mdpi.com
Processes of intracellular and extracellular transport play one of the most important roles in
the functioning of cells. Changes to transport mechanisms in a neuron can lead to the …

DisGeReExT: a knowledge discovery system for exploration of disease–gene associations through large-scale literature-wide analysis study

B Bhasuran, J Natarajan - Knowledge and Information Systems, 2023 - Springer
Objective Advanced experimental methods such as next-generation sequencing (NGS)
produced a large number of potential indicative genetic biomarkers and gene variants to …

A collaborative filtering-based approach to biomedical knowledge discovery

J Lever, S Gakkhar, M Gottlieb, T Rashnavadi… - …, 2018 - academic.oup.com
Motivation The increase in publication rates makes it challenging for an individual
researcher to stay abreast of all relevant research in order to find novel research …