[HTML][HTML] Neural network-based approaches for biomedical relation classification: a review

Y Zhang, H Lin, Z Yang, J Wang, Y Sun, B Xu… - Journal of biomedical …, 2019 - Elsevier
The explosive growth of biomedical literature has created a rich source of knowledge, such
as that on protein-protein interactions (PPIs) and drug-drug interactions (DDIs), locked in …

Open Information Extraction: A Review of Baseline Techniques, Approaches, and Applications

S Kamp, M Fayazi, Z Benameur-El, S Yu… - arXiv preprint arXiv …, 2023 - arxiv.org
With the abundant amount of available online and offline text data, there arises a crucial
need to extract the relation between phrases and summarize the main content of each …

Bioie: Biomedical information extraction with multi-head attention enhanced graph convolutional network

J Wu, R Zhang, T Gong, Y Liu… - 2021 IEEE International …, 2021 - ieeexplore.ieee.org
Constructing large-scaled medical knowledge graphs (MKGs) can significantly boost
healthcare applications for medical surveillance, bring much attention from recent research …

Extracting fact-condition relation from geological papers via deep structured semantic model with multi-grained representation

Q Chen, H Yao, D Zhou, S Li, L Dong - Computers & Geosciences, 2023 - Elsevier
The fact-condition statement plays a significant role in the geological papers, where
geological theory or phenomenon as a fact is constrained by its precondition. This constraint …

Protein interaction network reconstruction through ensemble deep learning with attention mechanism

F Li, F Zhu, X Ling, Q Liu - Frontiers in Bioengineering and …, 2020 - frontiersin.org
Protein interactions play an essential role in studying living systems and life phenomena. A
considerable amount of literature has been published on analyzing and predicting protein …

Delineation of ischemic lesion from brain MRI using attention gated fully convolutional network

R Karthik, M Radhakrishnan, R Rajalakshmi… - Biomedical Engineering …, 2021 - Springer
Precise delineation of the ischemic lesion from unimodal Magnetic Resonance Imaging
(MRI) is a challenging task due to the subtle intensity difference between the lesion and …

Interpretable machine learning methods for in vitro pharmaceutical formulation development

Z Ye, W Yang, Y Yang, D Ouyang - Food Frontiers, 2021 - Wiley Online Library
Background Machine learning has become an alternative approach for pharmaceutical
formulation development. However, many machine learning applications in pharmaceutics …

CGINet: graph convolutional network-based model for identifying chemical-gene interaction in an integrated multi-relational graph

W Wang, X Yang, C Wu, C Yang - BMC bioinformatics, 2020 - Springer
Background Elucidation of interactive relation between chemicals and genes is of key
relevance not only for discovering new drug leads in drug development but also for …

[HTML][HTML] Attention guided capsule networks for chemical-protein interaction extraction

C Sun, Z Yang, L Wang, Y Zhang, H Lin… - Journal of Biomedical …, 2020 - Elsevier
The biomedical literature contains a sufficient number of chemical-protein interactions
(CPIs). Automatic extraction of CPI is a crucial task in the biomedical domain, which has …

Chemical–protein interaction extraction via contextualized word representations and multihead attention

Y Zhang, H Lin, Z Yang, J Wang, Y Sun - Database, 2019 - academic.oup.com
A rich source of chemical–protein interactions (CPIs) is locked in the exponentially growing
biomedical literature. Automatic extraction of CPIs is a crucial task in biomedical natural …