Principles of genetic circuit design

JAN Brophy, CA Voigt - Nature methods, 2014 - nature.com
Cells navigate environments, communicate and build complex patterns by initiating gene
expression in response to specific signals. Engineers seek to harness this capability to …

Principles for designing synthetic microbial communities

NI Johns, T Blazejewski, ALC Gomes… - Current Opinion in …, 2016 - Elsevier
Highlights•Synthetic microbial communities have many potential uses in industrial
biotechnology.•Defined intercellular and spatiotemporal coordination enable precise …

Engineered bacteria can function in the mammalian gut long-term as live diagnostics of inflammation

DT Riglar, TW Giessen, M Baym, SJ Kerns… - Nature …, 2017 - nature.com
Bacteria can be engineered to function as diagnostics or therapeutics in the mammalian gut
but commercial translation of technologies to accomplish this has been hindered by the …

Characterization of 582 natural and synthetic terminators and quantification of their design constraints

YJ Chen, P Liu, AAK Nielsen, JAN Brophy, K Clancy… - Nature …, 2013 - nature.com
Large genetic engineering projects require more cistrons and consequently more strong and
reliable transcriptional terminators. We have measured the strengths of a library of …

Multi‐input CRISPR/C as genetic circuits that interface host regulatory networks

AAK Nielsen, CA Voigt - Molecular systems biology, 2014 - embopress.org
Genetic circuits require many regulatory parts in order to implement signal processing or
execute algorithms in cells. A potentially scalable approach is to use dC as9, which employs …

Engineering RGB color vision into Escherichia coli

J Fernandez-Rodriguez, F Moser, M Song… - Nature chemical …, 2017 - nature.com
Optogenetic tools use colored light to rapidly control gene expression in space and time. We
designed a genetically encoded system that gives Escherichia coli the ability to distinguish …

EcoFlex: A Multifunctional MoClo Kit for E. coli Synthetic Biology

SJ Moore, HE Lai, RJR Kelwick, SM Chee… - ACS Synthetic …, 2016 - ACS Publications
Golden Gate cloning is a prominent DNA assembly tool in synthetic biology for the assembly
of plasmid constructs often used in combinatorial pathway optimization, with a number of …

Efficient search, mapping, and optimization of multi‐protein genetic systems in diverse bacteria

I Farasat, M Kushwaha, J Collens… - Molecular systems …, 2014 - embopress.org
Developing predictive models of multi‐protein genetic systems to understand and optimize
their behavior remains a combinatorial challenge, particularly when measurement …

Advancing Yarrowia lipolytica as a superior biomanufacturing platform by tuning gene expression using promoter engineering

ML Sun, TQ Shi, L Lin, R Ledesma-Amaro, XJ Ji - Bioresource Technology, 2022 - Elsevier
Yarrowia lipolytica is recognized as an excellent non-conventional yeast in the field of
biomanufacturing, where it is used as a host to produce oleochemicals, terpenes, organic …

Rational design of evolutionarily stable microbial kill switches

F Stirling, L Bitzan, S O'Keefe, E Redfield, JWK Oliver… - Molecular cell, 2017 - cell.com
The evolutionary stability of synthetic genetic circuits is key to both the understanding and
application of genetic control elements. One useful but challenging situation is a switch …