Apple whole genome sequences: recent advances and new prospects

CP Peace, L Bianco, M Troggio… - Horticulture …, 2019 - academic.oup.com
In 2010, a major scientific milestone was achieved for tree fruit crops: publication of the first
draft whole genome sequence (WGS) for apple (Malus domestica). This WGS, v1. 0, was …

An integrated approach for increasing breeding efficiency in apple and peach in Europe

F Laurens, MJ Aranzana, P Arus, D Bassi… - Horticulture …, 2018 - academic.oup.com
Despite the availability of whole genome sequences of apple and peach, there has been a
considerable gap between genomics and breeding. To bridge the gap, the European Union …

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

N Daccord, JM Celton, G Linsmith, C Becker… - Nature …, 2017 - nature.com
Using the latest sequencing and optical mapping technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …

Analysis of the genetic diversity and structure across a wide range of germplasm reveals prominent gene flow in apple at the European level

J Urrestarazu, C Denancé, E Ravon, A Guyader… - BMC plant biology, 2016 - Springer
Background The amount and structure of genetic diversity in dessert apple germplasm
conserved at a European level is mostly unknown, since all diversity studies conducted in …

Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm

H Muranty, C Denancé, L Feugey, JL Crépin… - BMC Plant …, 2020 - Springer
Abstract Background Apple (Malus x domestica Borkh.) is one of the most important fruit tree
crops of temperate areas, with great economic and cultural value. Apple cultivars can be …

High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common …

S Vanderzande, NP Howard, L Cai, C Da Silva Linge… - PloS one, 2019 - journals.plos.org
High-quality genotypic data is a requirement for many genetic analyses. For any crop, errors
in genotype calls, phasing of markers, linkage maps, pedigree records, and unnoticed …

Hybrid origins of citrus varieties inferred from DNA marker analysis of nuclear and organelle genomes

T Shimizu, A Kitajima, K Nonaka, T Yoshioka, S Ohta… - PLoS …, 2016 - journals.plos.org
Most indigenous citrus varieties are assumed to be natural hybrids, but their parentage has
so far been determined in only a few cases because of their wide genetic diversity and the …

A multifaceted overview of apple tree domestication

A Cornille, F Antolín, E Garcia, C Vernesi, A Fietta… - Trends in plant …, 2019 - cell.com
The apple is an iconic tree and a major fruit crop worldwide. It is also a model species for the
study of the evolutionary processes and genomic basis underlying the domestication of …

The apple REFPOP—a reference population for genomics-assisted breeding in apple

M Jung, M Roth, MJ Aranzana… - Horticulture …, 2020 - academic.oup.com
Breeding of apple is a long-term and costly process due to the time and space requirements
for screening selection candidates. Genomics-assisted breeding utilizes genomic and …

Development of nuclear SSR and chloroplast genome markers in diverse Liriodendron chinense germplasm based on low-coverage whole genome sequencing

B Li, F Lin, P Huang, W Guo, Y Zheng - Biological Research, 2020 - Springer
Background Liriodendron chinense ranges widely in subtropical China and northern
Vietnam; however, it inhabits several small, isolated populations and is now an endangered …