aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

Z Pochon, N Bergfeldt, E Kırdök, M Vicente, T Naidoo… - Genome Biology, 2023 - Springer
Abstract Analysis of microbial data from archaeological samples is a growing field with great
potential for understanding ancient environments, lifestyles, and diseases. However, high …

ngsLCA—A toolkit for fast and flexible lowest common ancestor inference and taxonomic profiling of metagenomic data

Y Wang, TS Korneliussen, LE Holman… - Methods in Ecology …, 2022 - Wiley Online Library
Metagenomic data generated from environmental samples is increasingly common in the
analysis of modern and ancient biological communities. To obtain taxonomic profiles from …