AlphaFold, artificial intelligence (AI), and allostery

R Nussinov, M Zhang, Y Liu, H Jang - The Journal of Physical …, 2022 - ACS Publications
AlphaFold has burst into our lives. A powerful algorithm that underscores the strength of
biological sequence data and artificial intelligence (AI). AlphaFold has appended projects …

Recent advances in predicting protein–protein interactions with the aid of artificial intelligence algorithms

S Li, S Wu, L Wang, F Li, H Jiang, F Bai - Current Opinion in Structural …, 2022 - Elsevier
Protein–protein interactions (PPIs) are essential in the regulation of biological functions and
cell events, therefore understanding PPIs have become a key issue to understanding the …

Artificial neural networks for the prediction of monkeypox outbreak

B Manohar, R Das - Tropical Medicine and Infectious Disease, 2022 - mdpi.com
While the world is still struggling to recover from the harm caused by the widespread COVID-
19 pandemic, the monkeypox virus now poses a new threat of becoming a pandemic …

[HTML][HTML] Artificial intelligence approaches to human-microbiome protein–protein interactions

H Lim, F Cankara, CJ Tsai, O Keskin… - Current Opinion in …, 2022 - Elsevier
Host-microbiome interactions play significant roles in human health and disease. Artificial
intelligence approaches have been developed to better understand and predict the …

Omics data and data representations for deep learning-based predictive modeling

S Tsimenidis, E Vrochidou, GA Papakostas - International Journal of …, 2022 - mdpi.com
Medical discoveries mainly depend on the capability to process and analyze biological
datasets, which inundate the scientific community and are still expanding as the cost of next …

3D genome assisted protein–protein interaction prediction

Z Guo, L Liu, M Feng, K Su, R Chi, K Li, Q Lu… - Future Generation …, 2022 - Elsevier
Protein–protein interactions (PPIs) play key roles in the biological system, making revealing
protein interactome critical. A large portion of the protein interactome however, are yet to be …

Prediction of human-streptococcus pneumoniae protein-protein interactions using logistic regression

VD Prasasty, RA Hutagalung, R Gunadi… - … Biology and Chemistry, 2021 - Elsevier
Streptococcus pneumoniae is a major cause of mortality in children under five years old. In
recent years, the emergence of antibiotic-resistant strains of S. pneumoniae increases the …

A predictive approach for host-pathogen interactions using deep learning and protein sequences

T Shakibania, M Arabfard, A Najafi - VirusDisease, 2024 - Springer
Research on host-pathogen interactions (HPIs) has evolved rapidly during the past
decades. The more humans discover new pathogens, the more challenging it gets to find a …