[HTML][HTML] Mechanisms of gene duplication and amplification

AB Reams, JR Roth - Cold Spring Harbor perspectives …, 2015 - cshperspectives.cshlp.org
Abstract Changes in gene copy number are among the most frequent mutational events in
all genomes and were among the mutations for which a physical basis was first known. Yet …

Sources of spontaneous mutagenesis in bacteria

JW Schroeder, P Yeesin, LA Simmons… - Critical reviews in …, 2018 - Taylor & Francis
Mutations in an organism's genome can arise spontaneously, that is, in the absence of
exogenous stress and prior to selection. Mutations are often neutral or deleterious to …

IS1-mediated chromosomal amplification of the arn operon leads to polymyxin B resistance in Escherichia coli B strains

M Maybin, AM Ranade, U Schombel, N Gisch… - Mbio, 2024 - journals.asm.org
Polymyxins [colistin and polymyxin B (PMB)] comprise an important class of natural product
lipopeptide antibiotics used to treat multidrug-resistant Gram-negative bacterial infections …

Large-scale duplication events underpin population-level flexibility in tRNA gene copy number in Pseudomonas fluorescens SBW25

Z Khomarbaghi, WY Ngan, GB Ayan, S Lim… - Nucleic Acids …, 2024 - academic.oup.com
The complement of tRNA genes within a genome is typically considered to be a (relatively)
stable characteristic of an organism. Here, we demonstrate that bacterial tRNA gene set …

Rpn (YhgA-Like) proteins of Escherichia coli K-12 and their contribution to RecA-independent horizontal transfer

AW Kingston, C Ponkratz, EA Raleigh - Journal of bacteriology, 2017 - Am Soc Microbiol
Bacteria use a variety of DNA-mobilizing enzymes to facilitate environmental niche
adaptation via horizontal gene transfer. This has led to real-world problems, like the spread …

The birth of a bacterial tRNA gene by large-scale, tandem duplication events

GB Ayan, HJ Park, J Gallie - Elife, 2020 - elifesciences.org
Organisms differ in the types and numbers of tRNA genes that they carry. While the
evolutionary mechanisms behind tRNA gene set evolution have been investigated …

Antibiotic resistance mediated by gene amplifications

KPT Silva, A Khare - npj Antimicrobials and Resistance, 2024 - nature.com
Apart from horizontal gene transfer and sequence-altering mutational events, antibiotic
resistance can emerge due to the formation of tandem repeats of genomic regions. This …

Single Strand Annealing Plays a Major Role in RecA-Independent Recombination between Repeated Sequences in the Radioresistant Deinococcus radiodurans …

S Ithurbide, E Bentchikou, G Coste, B Bost… - PLoS …, 2015 - journals.plos.org
The bacterium Deinococcus radiodurans is one of the most radioresistant organisms known.
It is able to reconstruct a functional genome from hundreds of radiation-induced …

Repeatability and predictability in experimental evolution

PA Lind - Evolution, origin of life, concepts and methods, 2019 - Springer
Independent populations often use the same phenotypic and genetic solutions to adapt to a
selective challenge, suggesting that evolution is surprisingly repeatable. This observation …

Gene amplification mutations originate prior to selective stress in Acinetobacter baylyi

JA Herrmann, A Koprowska, TJ Winters, N Villanueva… - G3, 2023 - academic.oup.com
The controversial theory of adaptive amplification states gene amplification mutations are
induced by selective environments where they are enriched due to the stress caused by …