Comprehensive survey of recent drug discovery using deep learning

J Kim, S Park, D Min, W Kim - International Journal of Molecular Sciences, 2021 - mdpi.com
Drug discovery based on artificial intelligence has been in the spotlight recently as it
significantly reduces the time and cost required for developing novel drugs. With the …

Recent advances in deep learning for retrosynthesis

Z Zhong, J Song, Z Feng, T Liu, L Jia… - Wiley …, 2024 - Wiley Online Library
Retrosynthesis is the cornerstone of organic chemistry, providing chemists in material and
drug manufacturing access to poorly available and brand‐new molecules. Conventional rule …

Chemformer: a pre-trained transformer for computational chemistry

R Irwin, S Dimitriadis, J He… - … Learning: Science and …, 2022 - iopscience.iop.org
Transformer models coupled with a simplified molecular line entry system (SMILES) have
recently proven to be a powerful combination for solving challenges in cheminformatics …

Accurate prediction of molecular properties and drug targets using a self-supervised image representation learning framework

X Zeng, H Xiang, L Yu, J Wang, K Li… - Nature Machine …, 2022 - nature.com
The clinical efficacy and safety of a drug is determined by its molecular properties and
targets in humans. However, proteome-wide evaluation of all compounds in humans, or …

Large-scale chemical language representations capture molecular structure and properties

J Ross, B Belgodere, V Chenthamarakshan… - Nature Machine …, 2022 - nature.com
Abstract Models based on machine learning can enable accurate and fast molecular
property predictions, which is of interest in drug discovery and material design. Various …

Hierarchical molecular graph self-supervised learning for property prediction

X Zang, X Zhao, B Tang - Communications Chemistry, 2023 - nature.com
Molecular graph representation learning has shown considerable strength in molecular
analysis and drug discovery. Due to the difficulty of obtaining molecular property labels, pre …

SELFormer: molecular representation learning via SELFIES language models

A Yüksel, E Ulusoy, A Ünlü… - Machine Learning: Science …, 2023 - iopscience.iop.org
Automated computational analysis of the vast chemical space is critical for numerous fields
of research such as drug discovery and material science. Representation learning …

XGraphBoost: extracting graph neural network-based features for a better prediction of molecular properties

D Deng, X Chen, R Zhang, Z Lei… - Journal of chemical …, 2021 - ACS Publications
Determining the properties of chemical molecules is essential for screening candidates
similar to a specific drug. These candidate molecules are further evaluated for their target …

A fingerprints based molecular property prediction method using the BERT model

N Wen, G Liu, J Zhang, R Zhang, Y Fu… - Journal of Cheminformatics, 2022 - Springer
Molecular property prediction (MPP) is vital in drug discovery and drug reposition. Deep
learning-based MPP models capture molecular property-related features from various …

From intuition to AI: evolution of small molecule representations in drug discovery

M McGibbon, S Shave, J Dong, Y Gao… - Briefings in …, 2024 - academic.oup.com
Within drug discovery, the goal of AI scientists and cheminformaticians is to help identify
molecular starting points that will develop into safe and efficacious drugs while reducing …