The 4D nucleome project

J Dekker, AS Belmont, M Guttman, VO Leshyk, JT Lis… - Nature, 2017 - nature.com
Abstract The 4D Nucleome Network aims to develop and apply approaches to map the
structure and dynamics of the human and mouse genomes in space and time with the goal …

The interchromatin compartment participates in the structural and functional organization of the cell nucleus

T Cremer, M Cremer, B Hübner, A Silahtaroglu… - …, 2020 - Wiley Online Library
This article focuses on the role of the interchromatin compartment (IC) in shaping nuclear
landscapes. The IC is connected with nuclear pore complexes (NPCs) and harbors splicing …

Spontaneous driving forces give rise to protein− RNA condensates with coexisting phases and complex material properties

S Boeynaems, AS Holehouse… - Proceedings of the …, 2019 - National Acad Sciences
Phase separation of multivalent protein and RNA molecules underlies the biogenesis of
biomolecular condensates such as membraneless organelles. In vivo, these condensates …

[HTML][HTML] The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery

HG Stunnenberg, S Abrignani, D Adams, M de Almeida… - Cell, 2016 - cell.com
The International Human Epigenome Consortium (IHEC) coordinates the generation of a
catalog of high-resolution reference epigenomes of major primary human cell types. The …

LHX2-and LDB1-mediated trans interactions regulate olfactory receptor choice

K Monahan, A Horta, S Lomvardas - Nature, 2019 - nature.com
The genome is partitioned into topologically associated domains and genomic
compartments with shared chromatin valence. This architecture is constrained by the DNA …

Nitrogen-fixing organelle in a marine alga

TH Coale, V Loconte, KA Turk-Kubo, B Vanslembrouck… - Science, 2024 - science.org
Symbiotic interactions were key to the evolution of chloroplast and mitochondria organelles,
which mediate carbon and energy metabolism in eukaryotes. Biological nitrogen fixation, the …

Three-dimensional genome structures of single sensory neurons in mouse visual and olfactory systems

L Tan, D Xing, N Daley, XS Xie - Nature structural & molecular biology, 2019 - nature.com
Sensory neurons in the mouse eye and nose have unusual chromatin organization. Here we
report their three-dimensional (3D) genome structure at 20-kilobase (kb) resolution …

Laboratory water-window x-ray microscopy

M Kördel, A Dehlinger, C Seim, U Vogt, E Fogelqvist… - Optica, 2020 - opg.optica.org
Soft x-ray microscopy in the water window (∼ 285− 535 e V) is an emerging and unique tool
for 2D and 3D imaging of unstained intact cellular samples in their near-native state with few …

Using soft X-ray tomography for rapid whole-cell quantitative imaging of SARS-CoV-2-infected cells

V Loconte, JH Chen, M Cortese, A Ekman… - Cell reports …, 2021 - cell.com
High-resolution and rapid imaging of host cell ultrastructure can generate insights toward
viral disease mechanism, for example for a severe acute respiratory syndrome coronavirus …

Quantification, dynamic visualization, and validation of bias in ATAC-seq data with ataqv

P Orchard, Y Kyono, J Hensley, JO Kitzman… - Cell systems, 2020 - cell.com
The assay for transposase-accessible chromatin using sequencing (ATAC-seq) has become
the preferred method for mapping chromatin accessibility due to its time and input material …