Integration of virtual and high-throughput screening

J Bajorath - Nature Reviews Drug Discovery, 2002 - nature.com
High-throughput and virtual screening are important components of modern drug discovery
research. Typically, these screening technologies are considered distinct approaches, as …

Why do we need so many chemical similarity search methods?

RP Sheridan, SK Kearsley - Drug discovery today, 2002 - Elsevier
Computational tools to search chemical structure databases are essential to finding leads
early in a drug discovery project. Similarity methods are among the most diverse and most …

Mol2vec: unsupervised machine learning approach with chemical intuition

S Jaeger, S Fulle, S Turk - Journal of chemical information and …, 2018 - ACS Publications
Inspired by natural language processing techniques, we here introduce Mol2vec, which is
an unsupervised machine learning approach to learn vector representations of molecular …

Molecular similarity and diversity in chemoinformatics: from theory to applications

AG Maldonado, JP Doucet, M Petitjean, BT Fan - Molecular diversity, 2006 - Springer
This review is dedicated to a survey on molecular similarity and diversity. Key findings
reported in recent investigations are selectively highlighted and summarized. Even if this …

Auto-QChem: an automated workflow for the generation and storage of DFT calculations for organic molecules

AM Żurański, JY Wang, BJ Shields… - Reaction Chemistry & …, 2022 - pubs.rsc.org
This perspective describes Auto-QChem, an automatic, high-throughput and end-to-end
DFT calculation workflow that computes chemical descriptors for organic molecules …

Small molecule affinity fingerprinting: a tool for enzyme family subclassification, target identification, and inhibitor design

DC Greenbaum, WD Arnold, F Lu, L Hayrapetian… - Chemistry & biology, 2002 - cell.com
Classifying proteins into functionally distinct families based only on primary sequence
information remains a difficult task. We describe here a method to generate a large data set …

Shape signatures: a new approach to computer-aided ligand-and receptor-based drug design

RJ Zauhar, G Moyna, LF Tian, ZJ Li… - Journal of medicinal …, 2003 - ACS Publications
A unifying principle of rational drug design is the use of either shape similarity or
complementarity to identify compounds expected to be active against a given target. Shape …

[PDF][PDF] Creativity evaluation through latent semantic analysis

K Dunbar, E Forster - Proceedings of the Annual Meeting of the …, 2009 - escholarship.org
Abstract The Uses of Objects Task is a widely used creativity test. The test is usually scored
by humans, which introduces subjectivity and individual variance into creativity scores. Here …

Chemical database techniques in drug discovery

MA Miller - Nature Reviews Drug Discovery, 2002 - nature.com
Chemical databases are becoming a powerful tool in drug discovery. Database searches
based on possible requirements for biological activity can identify compounds that might be …

Combinatorial informatics in the post-genomics era

DK Agrafiotis, VS Lobanov, FR Salemme - Nature Reviews Drug …, 2002 - nature.com
The multitude of potential drug targets emerging from genome sequencing demands new
approaches to drug discovery. A chemogenomics strategy, which involves the generation of …