Validation of deep learning natural language processing algorithm for keyword extraction from pathology reports in electronic health records

Y Kim, JH Lee, S Choi, JM Lee, JH Kim, J Seok… - Scientific reports, 2020 - nature.com
Pathology reports contain the essential data for both clinical and research purposes.
However, the extraction of meaningful, qualitative data from the original document is difficult …

Common data elements of breast cancer for research databases: A systematic review

E Mirbagheri, M Ahmadi… - Journal of Family Medicine …, 2020 - journals.lww.com
Background: Common Data Elements (CDEs) are data-metadata descriptors used to collect
research study data. CDEs facilitate the collection, processing, and sharing of breast cancer …

Unifying screening processes within the PROSPR consortium: a conceptual model for breast, cervical, and colorectal cancer screening

EF Beaber, JJ Kim, MM Schapira… - Journal of the …, 2015 - academic.oup.com
General frameworks of the cancer screening process are available, but none directly
compare the process in detail across different organ sites. This limits the ability of medical …

Building the informatics infrastructure for comparative effectiveness research (CER): a review of the literature

MH Lopez, E Holve, IN Sarkar, C Segal - Medical care, 2012 - journals.lww.com
Background: Technological advances in clinical informatics have made large amounts of
data accessible and potentially useful for research. As a result, a burgeoning literature …

Evolutionary concepts in biobanking-the BC BioLibrary

PH Watson, JE Wilson-McManus, RO Barnes… - Journal of translational …, 2009 - Springer
Background Medical research to improve health care faces a major problem in the relatively
limited availability of adequately annotated and collected biospecimens. This limitation is …

Applying the archetype approach to the database of a biobank information management system

MB Späth, J Grimson - International journal of medical informatics, 2011 - Elsevier
PURPOSE: The purpose of this study is to investigate the feasibility of applying the
openEHR archetype approach to modelling the data in the database of an existing …

PaTH: towards a learning health system in the Mid-Atlantic region

W Amin, F Tsui, C Borromeo, CH Chuang… - Journal of the …, 2014 - academic.oup.com
Abstract The PaTH (University of Pittsburgh/UPMC, Penn State College of Medicine, Temple
University Hospital, and Johns Hopkins University) clinical data research network initiative is …

REDCap and the National Mesothelioma Virtual Bank—a scalable and sustainable model for rare disease biorepositories

R Rashid, S Copelli, JC Silverstein… - Journal of the American …, 2023 - academic.oup.com
Objective Rare disease research requires data sharing networks to power translational
studies. We describe novel use of Research Electronic Data Capture (REDCap), a web …

[HTML][HTML] DW4TR: a data warehouse for translational research

H Hu, M Correll, L Kvecher, M Osmond, J Clark… - Journal of biomedical …, 2011 - Elsevier
The linkage between the clinical and laboratory research domains is a key issue in
translational research. Integration of clinicopathologic data alone is a major task given the …

A call to standardize preanalytic data elements for biospecimens

JA Robb, ML Gulley, PL Fitzgibbons… - … of Pathology and …, 2014 - meridian.allenpress.com
Context.—Biospecimens must have appropriate clinical annotation (data) to ensure optimal
quality for both patient care and research. Clinical preanalytic variables are the focus of this …