Unraveling metagenomics through long-read sequencing: A comprehensive review

C Kim, M Pongpanich, T Porntaveetus - Journal of Translational Medicine, 2024 - Springer
The study of microbial communities has undergone significant advancements, starting from
the initial use of 16S rRNA sequencing to the adoption of shotgun metagenomics. However …

Navigating the seven challenges of taxonomic reference databases in metabarcoding analyses

F Keck, M Couton, F Altermatt - Molecular Ecology Resources, 2023 - Wiley Online Library
Assessment of biodiversity using metabarcoding data, such as from bulk or environmental
DNA sampling, is becoming increasingly relevant in ecology, biodiversity sciences and …

New Approaches to Plant Pathogen Detection and Disease Diagnosis

J Cubero, PJ Zarco-Tejada… - …, 2024 - Am Phytopath Society
Detecting plant pathogens and diagnosing diseases are critical components of successful
pest management. These key areas have undergone significant advancements driven by …

[HTML][HTML] Lactobacillus salivarius and Berberine Alleviated Yak Calves' Diarrhea via Accommodating Oxidation Resistance, Inflammatory Factors, and Intestinal …

Q He, S Lu, J Wang, C Xu, W Qu, S Nawaz, FS Ataya… - Animals, 2024 - mdpi.com
Simple Summary Yaks are economically important food animals in the plateau regions of
China, but bacterial diarrheal diseases frequently occur, with limited effective treatments. In …

Correlation between aeration time in aerobic granular sludge reactors with the production of bioactive polysaccharides and microbial communities

J Liu, KL Lam, Z Zhang, Y Deng, PCK Cheung… - Resources …, 2024 - Elsevier
Bioactive polysaccharides (PSs) as useful resources have been extracted from floc sludge,
but there is limited knowledge about those from granular sludge. To address this gap, three …

Semi-automated sequence curation for reliable reference datasets in ITS2 vascular plant DNA (meta-) barcoding

A Quaresma, MJ Ankenbrand, CAY Garcia, J Rufino… - Scientific Data, 2024 - nature.com
One of the most critical steps for accurate taxonomic identification in DNA (meta)-barcoding
is to have an accurate DNA reference sequence dataset for the marker of choice. Therefore …

Roadmap for the integration of environmental microbiomes in risk assessments under EFSA's remit

F Debode, S Caulier, S Demeter… - EFSA Supporting …, 2024 - Wiley Online Library
Scientific interest in the use of environmental microbiomes for risk assessment is rapidly
growing, as exemplified by various EFSA opinions. In the absence of official regulatory …

Microbiome and floral associations of a wild bee using biodiversity survey collections

PN Nguyen, F Samad‐zada, KD Chau… - Environmental …, 2024 - Wiley Online Library
The health of bees can be assessed through their microbiome, which serves as a biomarker
indicating the presence of both beneficial and harmful microorganisms within a bee …

Pollen metabarcoding reveals a broad diversity of plant sources available to farmland flower visitors near tropical montane forest

BK Montero, N Gamboa-Barrantes… - Frontiers in Plant …, 2025 - frontiersin.org
Despite the widely recognized role of pollinators in ecosystem services, we currently have a
poor understanding of the contribution of Natural Protected Areas neighboring agricultural …

Unveiling the diet of two generalist stink bugs, Halyomorpha halys and Pentatoma rufipes (Hemiptera: Pentatomidae), through metabarcoding of the ITS2 region from …

OH Berteloot, G Peusens, T Beliën… - Pest Management …, 2024 - Wiley Online Library
BACKGROUND The use of DNA metabarcoding has become an increasingly popular
technique to infer feeding relationships in polyphagous herbivores and predators …