Bioprocess digital twins of mammalian cell culture for advanced biomanufacturing

SY Park, CH Park, DH Choi, JK Hong… - Current Opinion in …, 2021 - Elsevier
Today's biomanufacturing processes are still operated based on experience, and thus can
hardly cope with increasing bioprocess complexity. Recently, there is a growing interest in …

[HTML][HTML] The era of big data: Genome-scale modelling meets machine learning

A Antonakoudis, R Barbosa, P Kotidis… - Computational and …, 2020 - Elsevier
With omics data being generated at an unprecedented rate, genome-scale modelling has
become pivotal in its organisation and analysis. However, machine learning methods have …

OxPhos defects cause hypermetabolism and reduce lifespan in cells and in patients with mitochondrial diseases

G Sturm, KR Karan, AS Monzel, B Santhanam… - Communications …, 2023 - nature.com
Patients with primary mitochondrial oxidative phosphorylation (OxPhos) defects present with
fatigue and multi-system disorders, are often lean, and die prematurely, but the mechanistic …

Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints

F Li, Y Chen, Q Qi, Y Wang, L Yuan, M Huang… - Nature …, 2022 - nature.com
Eukaryotic cells are used as cell factories to produce and secrete multitudes of recombinant
pharmaceutical proteins, including several of the current top-selling drugs. Due to the …

Multiplex secretome engineering enhances recombinant protein production and purity

S Kol, D Ley, T Wulff, M Decker, J Arnsdorf… - Nature …, 2020 - nature.com
Host cell proteins (HCPs) are process-related impurities generated during biotherapeutic
protein production. HCPs can be problematic if they pose a significant metabolic demand …

[HTML][HTML] Functional specialization of human salivary glands and origins of proteins intrinsic to human saliva

M Saitou, EA Gaylord, E Xu, AJ May, L Neznanova… - Cell reports, 2020 - cell.com
Salivary proteins are essential for maintaining health in the oral cavity and proximal
digestive tract, and they serve as potential diagnostic markers for monitoring human health …

Correcting for sparsity and interdependence in glycomics by accounting for glycan biosynthesis

B Bao, BP Kellman, AWT Chiang, Y Zhang… - Nature …, 2021 - nature.com
Glycans are fundamental cellular building blocks, involved in many organismal functions.
Advances in glycomics are elucidating the essential roles of glycans. Still, it remains …

Automated engineering of synthetic metabolic pathways for efficient biomanufacturing

I Otero-Muras, P Carbonell - Metabolic Engineering, 2021 - Elsevier
Metabolic engineering involves the engineering and optimization of processes from single-
cell to fermentation in order to increase production of valuable chemicals for health, food …

[HTML][HTML] Cellular allostatic load is linked to increased energy expenditure and accelerated biological aging

N Bobba-Alves, G Sturm, J Lin, SA Ware… - …, 2023 - Elsevier
Stress triggers anticipatory physiological responses that promote survival, a phenomenon
termed allostasis. However, the chronic activation of energy-dependent allostatic responses …

Synergising stoichiometric modelling with artificial neural networks to predict antibody glycosylation patterns in Chinese hamster ovary cells

A Antonakoudis, B Strain, R Barbosa, IJ del Val… - Computers & Chemical …, 2021 - Elsevier
In-process quality control of biotherapeutics, such as monoclonal antibodies, requires
computationally efficient process models that use readily measured process variables to …