Exact extreme-value statistics at mixed-order transitions

A Bar, SN Majumdar, G Schehr, D Mukamel - Physical Review E, 2016 - APS
We study extreme-value statistics for spatially extended models exhibiting mixed-order
phase transitions (MOT). These are phase transitions that exhibit features common to both …

Large bubble drives circular DNA melting

S Sengupta, SM Bhattacharjee, G Mishra - Physical Chemistry …, 2024 - pubs.rsc.org
We investigate the melting transition of non-supercoiled circular DNA of different lengths,
employing Brownian dynamics simulations. In the absence of supercoiling, we find that …

Localization, big-jump regime and the effect of disorder for a class of generalized pinning models

G Giacomin, B Havret - Journal of Statistical Physics, 2020 - Springer
One dimensional pinning models have been widely studied in the physical and
mathematical literature, also in presence of disorder. Roughly speaking, they undergo a …

Large bubble drives melting in circular DNA

S Sengupta, SM Bhattacharjee, G Mishra - arXiv preprint arXiv …, 2024 - arxiv.org
We investigate the melting transition of non-supercoiled circular DNA of different lengths,
employing Brownian dynamics simulation. In the absence of supercoiling, we find that …

Hotter isn't faster for a melting RNA hairpin

H Li, EM Bahçeci, M Sayar, A Kabakçıoğlu - arXiv preprint arXiv …, 2024 - arxiv.org
We investigate the denaturation dynamics of nucleic acids through extensive molecular
dynamics simulations of a coarse-grained RNA hairpin model. In apparent contradiction with …

Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA

D Jost - Bioinformatics, 2013 - academic.oup.com
Local opening of the DNA double helix is required in many fundamental biological
processes and is, in part, controlled by the degree of superhelicity imposed in vivo by the …

THE GENERALIZED POLAND-SCHERAGA MODEL: A BIVARIATE RENEWAL APPROACH TO DNA DENATURATION

M Khatib - 2016 - theses.hal.science
The Poland-Scheraga (PS) model is the standard basic model to study the denaturation
transition of two complementary and equally long strands of DNA. This model has enjoyed a …

Enhancement of PCR Detection Limit by Single-Tube Restriction Endonuclease-PCR (RE-PCR)

S Datta, R Budhauliya, S Chatterjee… - Molecular diagnosis & …, 2016 - Springer
Background Polymerase chain reaction (PCR) is widely used in biological research and
diagnostics because of its high sensitivity and specificity. However, the sensitivity of PCR is …

[引用][C] Sibnarayan Datta, Raghvendra Budhauliya, Soumya Chatterjee, Vanlalhmuaka, Vijay Veer & Runu Chakravarty

STR Endonuclease-PCR - Mol Diagn Ther, 2016