From patterns to patients: Advances in clinical machine learning for cancer diagnosis, prognosis, and treatment

K Swanson, E Wu, A Zhang, AA Alizadeh, J Zou - Cell, 2023 - cell.com
Machine learning (ML) is increasingly used in clinical oncology to diagnose cancers, predict
patient outcomes, and inform treatment planning. Here, we review recent applications of ML …

[HTML][HTML] Targeting the BRCA1/2 deficient cancer with PARP inhibitors: Clinical outcomes and mechanistic insights

A Ragupathi, M Singh, AM Perez… - Frontiers in Cell and …, 2023 - frontiersin.org
BRCA1 and BRCA2 play a critical role in a variety of molecular processes related to DNA
metabolism, including homologous recombination and mediating the replication stress …

[HTML][HTML] Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors

JK Lee, S Sivakumar, AB Schrock, R Madison… - NPJ Precision …, 2022 - nature.com
Recent clinical development of KRAS inhibitors has heightened interest in the genomic
landscape of KRAS-altered cancers. We performed a pan-cancer analysis of KRAS-altered …

Phase II, Open-Label Study of Encorafenib Plus Binimetinib in Patients With BRAFV600-Mutant Metastatic Non–Small-Cell Lung Cancer

GJ Riely, EF Smit, MJ Ahn, E Felip… - Journal of Clinical …, 2023 - ascopubs.org
PURPOSE The combination of encorafenib (BRAF inhibitor) plus binimetinib (MEK inhibitor)
has demonstrated clinical efficacy with an acceptable safety profile in patients with BRAF …

Tumor fraction correlates with detection of actionable variants across> 23,000 circulating tumor DNA samples

H Husain, DC Pavlick, BJ Fendler… - JCO Precision …, 2022 - ascopubs.org
PURPOSE Profiling of circulating tumor DNA (ctDNA) is increasingly adopted in the
management of solid tumors, concurrent with increased availability of more comprehensive …

[HTML][HTML] Potential pathogenic germline variant reporting from tumor comprehensive genomic profiling complements classic approaches to germline testing

N Tung, KC Dougherty, ES Gatof… - NPJ Precision …, 2023 - nature.com
Existing guidance regarding clinically informed germline testing for patients with cancer is
effective for evaluation of classic hereditary cancer syndromes and established gene/cancer …

[HTML][HTML] Tumor sequencing of African ancestry reveals differences in clinically relevant alterations across common cancers

E Jiagge, DX Jin, JY Newberg, T Perea-Chamblee… - Cancer cell, 2023 - cell.com
Cancer genomes from patients with African (AFR) ancestry have been poorly studied in
clinical research. We leverage two large genomic cohorts to investigate the relationship …

Serial profiling of circulating tumor DNA identifies dynamic evolution of clinically actionable genomic alterations in high-risk neuroblastoma

KR Bosse, AM Giudice, MV Lane, B McIntyre… - Cancer discovery, 2022 - AACR
Neuroblastoma evolution, heterogeneity, and resistance remain inadequately defined,
suggesting a role for circulating tumor DNA (ctDNA) sequencing. To define the utility of …

[HTML][HTML] Using cfDNA and ctDNA as oncologic markers: a path to clinical validation

J Dao, PJ Conway, B Subramani… - International journal of …, 2023 - mdpi.com
The detection of circulating tumor DNA (ctDNA) in liquid biopsy samples as an oncological
marker is being used in clinical trials at every step of clinical management. As ctDNA-based …

[HTML][HTML] Future perspective for the application of predictive biomarker testing in advanced stage non-small cell lung cancer

VD de Jager, W Timens, A Bayle, J Botling… - The Lancet Regional …, 2024 - thelancet.com
For patients with advanced stage non-small cell lung cancer (NSCLC), treatment strategies
have changed significantly due to the introduction of targeted therapies and immunotherapy …