Ancient DNA damage

J Dabney, M Meyer, S Pääbo - Cold Spring Harbor …, 2013 - cshperspectives.cshlp.org
Under favorable conditions DNA can survive for thousands of years in the remains of dead
organisms. The DNA extracted from such remains is invariably degraded to a small average …

[HTML][HTML] Origin, dynamics, and implications of extracellular DNA pools in marine sediments

A Torti, MA Lever, BB Jørgensen - Marine genomics, 2015 - Elsevier
In marine sediments, DNA occurs both inside and outside living organisms. DNA not
enclosed in living cells may account for the largest fraction of total DNA, and include …

Upper Palaeolithic genomes reveal deep roots of modern Eurasians

ER Jones, G Gonzalez-Fortes, S Connell… - Nature …, 2015 - nature.com
We extend the scope of European palaeogenomics by sequencing the genomes of Late
Upper Palaeolithic (13,300 years old, 1.4-fold coverage) and Mesolithic (9,700 years old …

Single‐tube library preparation for degraded DNA

C Carøe, S Gopalakrishnan, L Vinner… - Methods in Ecology …, 2018 - Wiley Online Library
In recent years, massive parallel sequencing has revolutionised the study of degraded DNA,
thus enabling the field of ancient DNA to evolve into that of paleogenomics. Despite these …

Partial uracil–DNA–glycosylase treatment for screening of ancient DNA

N Rohland, E Harney, S Mallick… - … Transactions of the …, 2015 - royalsocietypublishing.org
The challenge of sequencing ancient DNA has led to the development of specialized
laboratory protocols that have focused on reducing contamination and maximizing the …

A draft sequence of the Neandertal genome

RE Green, J Krause, AW Briggs, T Maricic, U Stenzel… - science, 2010 - science.org
Neandertals, the closest evolutionary relatives of present-day humans, lived in large parts of
Europe and western Asia before disappearing 30,000 years ago. We present a draft …

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

ME Allentoft, M Collins, D Harker… - … of the Royal …, 2012 - royalsocietypublishing.org
Claims of extreme survival of DNA have emphasized the need for reliable models of DNA
degradation through time. By analysing mitochondrial DNA (mtDNA) from 158 radiocarbon …

A female Viking warrior confirmed by genomics

C Hedenstierna‐Jonson, A Kjellström… - American journal of …, 2017 - Wiley Online Library
Objectives The objective of this study has been to confirm the sex and the affinity of an
individual buried in a well‐furnished warrior grave (Bj 581) in the Viking Age town of Birka …

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

MT Gansauge, M Meyer - Nature protocols, 2013 - nature.com
This protocol describes a method for converting short single-stranded and double-stranded
DNA into libraries compatible with high-throughput sequencing using Illumina technology …

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

P Skoglund, BH Northoff, MV Shunkov… - Proceedings of the …, 2014 - National Acad Sciences
One of the main impediments for obtaining DNA sequences from ancient human skeletons is
the presence of contaminating modern human DNA molecules in many fossil samples and …