Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use

JF Atkins, G Loughran, PR Bhatt, AE Firth… - Nucleic acids …, 2016 - academic.oup.com
Genetic decoding is not 'frozen'as was earlier thought, but dynamic. One facet of this is
frameshifting that often results in synthesis of a C-terminal region encoded by a new frame …

Overview on Sobemoviruses and a Proposal for the Creation of the Family Sobemoviridae

M Sõmera, C Sarmiento, E Truve - Viruses, 2015 - mdpi.com
The genus Sobemovirus, unassigned to any family, consists of viruses with single-stranded
plus-oriented single-component RNA genomes and small icosahedral particles. Currently …

Discovery of a small non-AUG-initiated ORF in poleroviruses and luteoviruses that is required for long-distance movement

E Smirnova, AE Firth, WA Miller, D Scheidecker… - PLoS …, 2015 - journals.plos.org
Viruses in the family Luteoviridae have positive-sense RNA genomes of around 5.2 to 6.3
kb, and they are limited to the phloem in infected plants. The Luteovirus and Polerovirus …

[HTML][HTML] An essential fifth coding ORF in the sobemoviruses

R Ling, AE Pate, JP Carr, AE Firth - Virology, 2013 - Elsevier
The sobemoviruses have one of the smallest of all known RNA virus genomes. ORF1
encodes P1 which plays a role in suppression of silencing and virus movement, ORFs 2a …

Diversification of Rice Yellow Mottle Virus and Related Viruses Spans the History of Agriculture from the Neolithic to the Present

D Fargette, A Pinel-Galzi, D Sereme, S Lacombe… - PLoS …, 2008 - journals.plos.org
The mechanisms of evolution of plant viruses are being unraveled, yet the timescale of their
evolution remains an enigma. To address this critical issue, the divergence time of plant …

Ryegrass mottle virus complete genome determination and development of infectious cDNA by combining two methods–3′ RACE and RNA-Seq

I Balke, I Silamikelis, I Radovica-Spalvina, V Zeltina… - PloS one, 2023 - journals.plos.org
Ryegrass mottle virus (RGMoV; genus: Sobemovirus) is a single-stranded positive RNA
virus with a 30 nm viral particle size. It exhibits T= 3 symmetry with 180 coat protein (CP) …

Ribosomal frameshifting in decoding plant viral RNAs

WA Miller, DP Giedroc - Recoding: expansion of decoding rules enriches …, 2010 - Springer
Frameshifting provides an elegant mechanism by which viral RNA both encodes
overlapping genes and controls expression levels of those genes. As in animal viruses, the …

[HTML][HTML] Processing of SeMV polyproteins revisited

S Nair, HS Savithri - Virology, 2010 - Elsevier
Processing of Sesbania mosaic virus (SeMV) polyprotein 2a and 2ab was reanalyzed in the
view of the new genome organization of sobemoviruses. Polyprotein 2a when expressed in …

Rubus chlorotic mottle virus, a new sobemovirus infecting raspberry and bramble

WJ McGavin, SA MacFarlane - Virus research, 2009 - Elsevier
The complete nucleotide sequence of a new member of the unassigned genus
Sobemovirus, isolated from raspberry and bramble plants in north east Scotland and given …

VPg impact on ryegrass mottle virus serine-like 3C protease proteolysis and structure

G Kalnins, R Ludviga, I Kalnciema, G Resevica… - International Journal of …, 2023 - mdpi.com
Sobemoviruses encode serine-like 3C proteases (Pro) that participate in the processing and
maturation of other virus-encoded proteins. Its cis and trans activity is mediated by the …