Unusual biophysics of intrinsically disordered proteins

VN Uversky - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2013 - Elsevier
Research of a past decade and a half leaves no doubt that complete understanding of
protein functionality requires close consideration of the fact that many functional proteins do …

p53 proteoforms and intrinsic disorder: An illustration of the protein structure–function continuum concept

VN Uversky - International journal of molecular sciences, 2016 - mdpi.com
Although it is one of the most studied proteins, p53 continues to be an enigma. This protein
has numerous biological functions, possesses intrinsically disordered regions crucial for its …

Water networks in photosystem II using crystalline molecular dynamics simulations and room-temperature XFEL serial crystallography

MD Doyle, A Bhowmick, DC Wych… - Journal of the …, 2023 - ACS Publications
Structural dynamics of water and its hydrogen-bonding networks play an important role in
enzyme function via the transport of protons, ions, and substrates. To gain insights into these …

The energy landscapes and motions of proteins

H Frauenfelder, SG Sligar, PG Wolynes - Science, 1991 - science.org
Recent experiments, advances in theory, and analogies to other complex systems such as
glasses and spin glasses yield insight into protein dynamics. The basis of the understanding …

A new force field for molecular mechanical simulation of nucleic acids and proteins

SJ Weiner, PA Kollman, DA Case… - Journal of the …, 1984 - ACS Publications
We present the development of a force field for simulation of nucleic acids and proteins. Our
approach began by obtaining equilibrium bond lengths and angles from microwave, neutron …

Dynamical transition of myoglobin revealed by inelastic neutron scattering

W Doster, S Cusack, W Petry - Nature, 1989 - nature.com
Structural fluctuations in proteins on the picosecond timescale have been studied in
considerable detail by theoretical methods such as molecular dynamics simulation1, 2, but …

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor.

B Brooks, M Karplus - … of the National Academy of Sciences, 1983 - National Acad Sciences
A normal mode analysis making use of an empirical potential function including local and
nonlocal (nonbonded) interactions is performed for the bovine pancreatic trypsin inhibitor in …

Computation of molecular volume

ML Connolly - Journal of the American Chemical society, 1985 - ACS Publications
Volume is a fundamental physical property of molecules that is important in understanding
their structure, function, and interactions. Present methods for computing volumes of …

Effects of temperature on protein structure and dynamics: X-ray crystallographic studies of the protein ribonuclease-A at nine different temperatures from 98 to 320K

RF Tilton Jr, JC Dewan, GA Petsko - Biochemistry, 1992 - ACS Publications
Gregory A. Petsko Rosenstiel Basic Medical Sciences Research Center, BrandeisUniversity,
Waltham, Massachusetts 02254-9110 Received January 15, 1991; Revised Manuscript …

[图书][B] Proteins: A Theoretical Perspective of Dynamics, Structure, and Thermodynamics, Volume 71

I Prigogine, SA Rice - 2009 - books.google.com
Presenting a wide-ranging view of current developments in protein research, the papers in
this collection, each written by highly regarded experts in the field, examine various aspects …